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View Structure Prediction Details

Protein: gi|113623967, gi...
Organism: Oryza sativa Japonica Group
Length: 501 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|113623967, gi....

Description E-value Query
Range
Subject
Range
gi|215768081, gi... - gi|51964956|ref|XP_507262.1| PREDICTED P0104B02.16-1 gene product [Oryza sativa (japonica cultivar-g...
387.0 [0..1] [501..1]

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Predicted Domain #1
Region A:
Residues: [1-501]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVSVAATDS DTAQPVQYST FFASRYVRDP LPRFRMPEQS IPREAAYQII NDELMLDGNP  60
   61 RLNLASFVTT WMEPECDKLI MDSVNKNYVD MDEYPVTTEL QNRCVNMIAH LFNAPIKEDE 120
  121 TAIGVGTVGS SEAIMLAGLA FKRKWQNKRK EQGKPCDKPN IVTGANVQVC WEKFARYFEV 180
  181 ELKEVKLSEG YYVMDPVKAV EMVDENTICV AAILGSTLTG EFEDVKLLNN LLTEKNKETG 240
  241 WDVPIHVDAA SGGFIAPFLY PELEWDFRLP LVKSINVSGH KYGLVYPGVG WVIWRSKEDL 300
  301 PEELIFHINY LGTDQPTFTL NFSKGSSQII AQYYQLIRLG FEGYKNIMQN CMENTAILRE 360
  361 GIEATGRFEI LSKEAGVPLV AFSLKDSGRY TVFDISEHLR RFGWIVPAYT MPANAEHVAV 420
  421 LRVVIREDFS RSLAERLVSD IVKILHELDA HSAQVLKISS AIAKQQSGDD GVVTKKSVLE 480
  481 TEREIFAYWR DQVKKKQTGI C

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 68.522879
Match: 1xeyA
Description: Crystal structure of the complex of Escherichia coli GADA with glutarate at 2.05 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 2.29878871754893 bayes_pls_golite062009
transferase activity 1.44093490824786 bayes_pls_golite062009
glutamate decarboxylase activity 1.34215658716536 bayes_pls_golite062009
transferase activity, transferring nitrogenous groups 1.28316822767388 bayes_pls_golite062009
transaminase activity 1.24990480711889 bayes_pls_golite062009
glycine dehydrogenase (decarboxylating) activity 1.05524734914785 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor 1.05524734914785 bayes_pls_golite062009
binding 0.252160165096264 bayes_pls_golite062009
N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity 0.223759435414525 bayes_pls_golite062009
pyridoxal phosphate binding 0.16957228630576 bayes_pls_golite062009
vitamin B6 binding 0.16957228630576 bayes_pls_golite062009
L-aspartate:2-oxoglutarate aminotransferase activity 0.13686553668007 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle