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View Structure Prediction Details

Protein: GCSH_ORYSJ
Organism: Oryza sativa Japonica Group
Length: 164 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GCSH_ORYSJ.

Description E-value Query
Range
Subject
Range
gi|437993, gi|21... - gi|437993|emb|CAA81073.1| H-protein [Flaveria cronquistii], pir||S60195 glycine cleavage system prot...
gi|437999, gi|36... - pir||S60199 glycine cleavage system protein H precursor (clone HFP20) - Flaveria pringlei, gi|43799...
211.0 [0..1] [163..1]

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Predicted Domain #1
Region A:
Residues: [1-164]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALRLWASSA ANALKISCSG ATRAAPAYSI SRYFSTVLDG LKYSSSHEWV KNDGSVATIG  60
   61 ITDHAQGHLG EVVFVELPEA GAKVSQGGAF GNVESVKATS DINSPISGEV VEVNDKLSET 120
  121 PGLINSSPYE DGWMIKVKPS SPSELDALLD PAKYTKHCEE EDAH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 44.045757
Match: 1dxmA
Description: Protein H of glycine cleavage system
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
aminomethyltransferase activity 7.15454688996532 bayes_pls_golite062009
glycine dehydrogenase (decarboxylating) activity 6.56199545993139 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor 6.56199545993139 bayes_pls_golite062009
acetyl-CoA carboxylase activity 2.30995434688093 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors 1.93346020821958 bayes_pls_golite062009
CoA carboxylase activity 1.92420834470262 bayes_pls_golite062009
ligase activity, forming carbon-carbon bonds 1.62422217856347 bayes_pls_golite062009
catalytic activity 1.39099902011318 bayes_pls_golite062009
binding 0.750493230403211 bayes_pls_golite062009
ligase activity 0.56894584941056 bayes_pls_golite062009
protein binding 0.396415237274882 bayes_pls_golite062009
methyltransferase activity 0.20639453390789 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.148800940907572 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle