YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|108710775, gi...
Organism: Oryza sativa Japonica Group
Length: 244 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|108710775, gi....

Description E-value Query
Range
Subject
Range
gi|61367959 - gi|61367959|gb|AAX43073.1| COX11-like cytochrome c oxidase assembly protein [synthetic construct]
326.0 [0..6] [243..22]

Back

Predicted Domain #1
Region A:
Residues: [1-244]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPPPPPSLA RLHQRLSLSL LRGRSPPAAA DAFLRRGLAS SASSSSSAAA AAAVAAAAAG  60
   61 REKSSRRTLA YLLGVAAAMV GASYAAVPLY RRFCQATGYG GTVQRRESVE EKISRHARDG 120
  121 TTTSREIIVQ FNADVADGMP WKFIPTQREV KVKPGESALA FYTAENRSSA PITGVSTYNV 180
  181 APMKAAIYFN KIQCFCFEEQ TLLPGEQIDM PVFFYIDPEF ETDPKMEGVN NIVLSYTFFK 240
  241 VNDS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 61.0
Match: 1so9A
Description: Solution Structure of apoCox11, 30 structures
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.35208987191699 bayes_pls_golite062009
catalytic activity 0.00423194953028799 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle