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View Structure Prediction Details

Protein: gi|34395244, gi|...
Organism: Oryza sativa Japonica Group
Length: 488 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|34395244, gi|....

Description E-value Query
Range
Subject
Range
gi|115472617, gi... - gi|115472617|ref|NP_001059907.1| Os07g0543300 [Oryza sativa (japonica cultivar-group)], gi|113611443...
875.0 [0..1] [488..533]

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Predicted Domain #1
Region A:
Residues: [1-488]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGNLLANYV QVNVMLPLDV VTVDNKFEKV DETRAQLKKL TEAGVDGVMV DVWWGLVEGK  60
   61 GPGSYDWEAY KQLFRLVQEA GLKLQAIMSF HQCGGNVGDI VNIPIPQWVR DVGASDPDIF 120
  121 YTNRGGARNI EYLTLGVDDQ PLFHGRTAIQ MYADYMKSFR ENMAEFLDTG VIVDIEVGLG 180
  181 PAGEMRYPSY PQSQGWVFPG IGEFICYDKY LEADFKAEAA KAGHPEWELP DDAGEYNDTP 240
  241 EKTRFFADNG TYVTEKGKFF LTWYSNKLIK HGDKILDEAN KVFLGCRVQL AIKISGIHWW 300
  301 YRVPNHAAEL TAGYYNLDNR DGYRTIARML TRHRACVNFT CAEMRDSEQS SEAKSAPEEL 360
  361 VQQVLSAGWR EGLHVACENA LGRYDATAYN TILRNSRPTG INKNGPPEHK LFGFTYLRLS 420
  421 DELLEGQNYS TFKTFVKRMH ANLDYNSNVD PLEPLQRSMP EMPIGKILQA AHPKLAPFPF 480
  481 DENTDLPV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 1bfnA
Description: BETA-AMYLASE/BETA-CYCLODEXTRIN COMPLEX
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.32563207632796 bayes_pls_golite062009
hydrolase activity 0.85514037342026 bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds 0.80912338090552 bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds 0.41375210927547 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle