YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: RL19_CAUCR
Organism: Caulobacter crescentus CB15
Length: 131 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL19_CAUCR.

Description E-value Query
Range		 Subject
Range
gi|83727489, gi|... - gi|83745799|ref|ZP_00942856.1| LSU ribosomal protein L19P [Ralstonia solanacearum UW551], gi|8372748...
 179.0 [0..2] [130..50]
RL19_BRADU - 50S ribosomal protein L19 OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 1479...
RL19_BRAJA - 50S ribosomal protein L19 OS=Bradyrhizobium japonicum GN=rplS PE=3 SV=1
 178.0 [0..3] [125..1]
RL19_XANP2 - 50S ribosomal protein L19 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplS PE=3 SV...
 176.0 [0..3] [127..1]
RL19_BARHE - 50S ribosomal protein L19 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / Houston 1) GN=rplS...
RL19_BARHE - 50S ribosomal protein L19 OS=Bartonella henselae GN=rplS PE=3 SV=1
 176.0 [0..3] [128..1]
RL19_RHOP2 - 50S ribosomal protein L19 OS=Rhodopseudomonas palustris (strain HaA2) GN=rplS PE=3 SV=1
RL19_RHOPS - 50S ribosomal protein L19 OS=Rhodopseudomonas palustris (strain BisB5) GN=rplS PE=3 SV=1
 176.0 [0..3] [131..1]
rplS, L19 - rplS, L19 50s ribosomal protein L19 266732:267121 reverse MW:14297
RL19_RHOPT - 50S ribosomal protein L19 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rplS PE=3 SV=1
RL19_RHOPA - 50S ribosomal protein L19 OS=Rhodopseudomonas palustris GN=rplS PE=1 SV=1
 174.0 [0..3] [129..1]
RL19_BRASB - 50S ribosomal protein L19 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rplS PE=3 SV=1
 174.0 [0..3] [128..1]
RL19_NITHX - 50S ribosomal protein L19 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rplS PE=3 SV=1
 174.0 [0..3] [128..1]
RL19_BARQU - 50S ribosomal protein L19 OS=Bartonella quintana GN=rplS PE=3 SV=1
RL19_BARQU - 50S ribosomal protein L19 OS=Bartonella quintana (strain Toulouse) GN=rplS PE=3 SV=1
 174.0 [0..3] [129..1]
RL19_RHIEC - 50S ribosomal protein L19 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rplS PE=3 SV=1
 173.0 [0..3] [129..1]

Back

Predicted Domain #1
Region A:
Residues: [1-131] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAINIIAQLE QEESARLLAA RAIPDFRPGD TLRVNVKIKE GERERVQAYE GVCIARAGTG  60
   61 VHESFTVRKI SFGEGVERLF PLLSPSIESI EVKRRGVVRR AKLYYLRDRR GKSARIAERA 120
  121 GGPKASASTE A

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 40.09691
Match: 1vs6P
Description: No description for 1vs6P was found.

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 9.75663213016935 bayes_pls_golite062009
structural molecule activity 9.17485893013108 bayes_pls_golite062009
RNA binding 1.4457902513736 bayes_pls_golite062009
binding 1.06497983674709 bayes_pls_golite062009
nucleic acid binding 0.694156012779703 bayes_pls_golite062009
transcription regulator activity 0.531244221462633 bayes_pls_golite062009
protein binding 0.403456843184132 bayes_pls_golite062009
translation regulator activity 0.20179424040045 bayes_pls_golite062009
translation factor activity, nucleic acid binding 0.177099375659271 bayes_pls_golite062009
DNA binding 0.119656223173058 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle