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View Structure Prediction Details

Protein: gi|30260853, gi|...
Organism: Bacillus anthracis str. Ames
Length: 291 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260853, gi|....

Description E-value Query
Range
Subject
Range
COX2_VIGUN - Cytochrome c oxidase subunit 2, mitochondrial (Fragment) OS=Vigna unguiculata GN=COX2 PE=2 SV=2
2.0E-82 [2..242] [118..376]
gi|6503070 - gi|6503070|gb|AAF14574.1|AF182780_1 cytochrome oxidase subunit 2 [Neonotonia wightii]
6.0E-81 [1..238] [125..381]
COXT_SOYBN - Cytochrome c oxidase subunit 2, mitochondrial (Fragment) OS=Glycine max GN=COX2 PE=3 SV=1
7.0E-80 [1..242] [134..394]
gi|162279926, gi... - gi|87248025|gb|ABD36067.1| cytochrome oxidase subunit 2 [Beta vulgaris subsp. vulgaris], gi|16227992...
8.0E-79 [13..241] [6..253]
gi|2687657, gi|7... - pir||T08042 cytochrome-c oxidase (EC 1.9.3.1) chain II - radish mitochondrion, gi|2687657|gb|AAB8886...
1.0E-77 [10..241] [3..253]
gi|2689078 - gi|2689078|gb|AAB88906.1| cytochrome c oxidase subunit II [Brassica rapa]
gi|2689078|gb|AA... - cytochrome c oxidase subunit II [Brassica rapa]
2.0E-77 [10..241] [3..253]
gi|78459557 - gi|78459557|gb|ABB43241.1| cytochrome c oxidase subunit II [Solanum tuberosum]
2.0E-77 [10..241] [3..253]
COX2_MARPO - Cytochrome c oxidase subunit 2 OS=Marchantia polymorpha GN=COX2 PE=3 SV=3
2.0E-77 [15..241] [6..250]
gi|23095854 - gi|23095854|emb|CAD20888.1| cytochrome oxidase subunit 2 [Ruscus aculeatus]
3.0E-77 [10..241] [3..253]
gi|94502716 - gi|94502716|ref|YP_588423.1| cytochrome c oxidase subunit 2 [Zea mays subsp. mays]
COX2_MAIZE - Cytochrome c oxidase subunit 2 OS=Zea mays GN=COX2 PE=2 SV=4
3.0E-77 [7..241] [2..255]

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Predicted Domain #1
Region A:
Residues: [1-291]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLKKAFWKL ASLLPLSLLL FLGGCDKKLA VLNPQGPVAK AQYDLIVWSF LLMSLIIAIV  60
   61 FILFTVILIR YREKPENMDY EPPEQHGNTL LEIIWTLVPV IIVIALSIPT VKATYASEEV 120
  121 PKESKHIKPV EIYVTSANWK WLFSYPEEKI ETVNYLNIPA GVPIQFKLTS VGPMNAFWVP 180
  181 ELGGMKYTMD GMIMDLYLQA DKPGSYLGRS ANFSGEGFTH MEFEVEAKTK EKYDKWVKEV 240
  241 QQTAPKLTED KYNEIVKPGV VGRMTFSSHH LSYVDPKSLE YCDYNYYKNK K

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 72.0
Match: 1fftB
Description: Quinol oxidase (CyoA); Cytochrome O ubiquinol oxidase, subunit II
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
heme-copper terminal oxidase activity 11.9675111703706 bayes_pls_golite062009
cytochrome-c oxidase activity 11.8880744416502 bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor 11.8880744416502 bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors 11.8880744416502 bayes_pls_golite062009
oxidoreductase activity 5.65538295246639 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 5.58345655724775 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 5.42917542404103 bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors 5.29537051871239 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 5.16682116741947 bayes_pls_golite062009
cation transmembrane transporter activity 4.89891856458607 bayes_pls_golite062009
ion transmembrane transporter activity 4.69052551796432 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 4.2605366734397 bayes_pls_golite062009
substrate-specific transporter activity 4.04391929184076 bayes_pls_golite062009
electron carrier activity 1.92012405624998 bayes_pls_golite062009
binding 1.17712143392135 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 0.50970361410839 bayes_pls_golite062009
transmembrane receptor protein kinase activity 0.49362626665416 bayes_pls_golite062009
kinase activity 0.487072060813572 bayes_pls_golite062009
transmembrane receptor activity 0.454065230310798 bayes_pls_golite062009
protein kinase activity 0.436639038220637 bayes_pls_golite062009
catalytic activity 0.363071622766357 bayes_pls_golite062009
oxidoreduction-driven active transmembrane transporter activity 0.35835230050467 bayes_pls_golite062009
protein binding 0.3532683439394 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.325944931150435 bayes_pls_golite062009
receptor activity 0.325909184421577 bayes_pls_golite062009
molecular transducer activity 0.244544454540961 bayes_pls_golite062009
signal transducer activity 0.244544454540961 bayes_pls_golite062009
transmembrane receptor protein tyrosine kinase activity 0.176852135739061 bayes_pls_golite062009
receptor binding 0.04439573213493 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
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