YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30255959, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	546 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30255959, gi|....

Description	E-value	Query Range	Subject Range
gi\|228656410, gi... - gi\|229127057\|ref\|ZP_04256056.1\| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-Cer4], gi\|2... gi\|30019776, gi\|... - gi\|30019776\|ref\|NP_831407.1\| flagellar motor switch protein [Bacillus cereus ATCC 14579], gi\|2989532...	0.0	[1..544]	[1..544]
gi\|49328867, gi\|... - gi\|49477311\|ref\|YP_035851.1\| flagellar motor switch protein [Bacillus thuringiensis serovar konkukia...	0.0	[1..544]	[1..544]
gi\|74491863, gi\|... - gi\|75760649\|ref\|ZP_00740677.1\| Chemotaxis protein cheC [Bacillus thuringiensis serovar israelensis A...	0.0	[1..544]	[1..542]
gi\|42736743, gi\|... - gi\|42780823\|ref\|NP_978070.1\| flagellar motor switch protein [Bacillus cereus ATCC 10987], gi\|4273674...	0.0	[1..544]	[1..544]
gi\|47557031, gi\|... - gi\|47566114\|ref\|ZP_00237152.1\| chemotaxis protein cheC [Bacillus cereus G9241], gi\|47557031\|gb\|EAL15...	0.0	[1..544]	[1..544]
gi\|229166572, gi... - gi\|229166572\|ref\|ZP_04294324.1\| CheC, inhibitor of MCP methylation [Bacillus cereus AH621], gi\|22861... gi\|163939537, gi... - gi\|89204841\|ref\|ZP_01183416.1\| Surface presentation of antigens (SPOA) protein:CheC-like protein [Ba...	0.0	[1..544]	[1..546]
gi\|152975143, gi... - gi\|89202440\|ref\|ZP_01181160.1\| Surface presentation of antigens (SPOA) protein:CheC-like protein [Ba...	0.0	[1..544]	[1..552]
gi\|16802742 - gi\|16802742\|ref\|NP_464227.1\| flagellar motor switch protein [Listeria monocytogenes EGD-e] gi\|255028594 - gi\|255028594\|ref\|ZP_05300545.1\| flagellar motor switch protein [Listeria monocytogenes LO28] gi\|16410089, gi\|... - pir\|\|AD1162 flagellar motor switch protein fliY homolog lmo0700 [imported] - Listeria monocytogenes ... gi\|224501995 - gi\|224501995\|ref\|ZP_03670302.1\| flagellar motor switch protein [Listeria monocytogenes FSL R2-561]	2.0E-91	[19..546]	[6..514]
gi\|16799783 - gi\|16799783\|ref\|NP_470051.1\| flagellar motor switch protein [Listeria innocua Clip11262] gi\|25515109, gi\|... - pir\|\|AD1521 flagellar motor switch protein fliY homolog lin0708 [imported] - Listeria innocua (strai...	6.0E-91	[19..546]	[6..512]
gi\|47095266, gi\|... - gi\|47095266\|ref\|ZP_00232877.1\| flagellar motor switch domain protein [Listeria monocytogenes str. 1/...	1.0E-90	[25..546]	[1..503]

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Predicted Domain #1

Region A:
Residues: [1-218]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPEQHTKGDT STIVLEKENE HLTPQECDIL GEIANISFGS ASTVLSTILN RQVSITAPRI  60
   61 ELVDLYDSSD VEVPHVVLNI HFTKGLDMEN LLVLKQDVAL SIADLMMMGT GEVEDGKELG 120
  121 ELELSAVQEA MNQMMGFAAT SMSEFFQDTV DMSPPTIKVV KLSEEMEKIS EIDGNQTIVK 180
  181 VSFDLKIDNL VNSKLVQIVS VEHAKQMINK LMQLSGGV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.0
Match:	1xkrA
Description:	X-ray Structure of Thermotoga maritima CheC
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [219-432]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEQDEPAEVV ETEIVEEQVE KEHLTQEEKD VLGEIANISI GSASTVLSTL LNQPVSISTP  60
   61 NVEAINVRHY DGVPVPFVIL NVDFVEGLKN ENVFVFTKDV ALTMVDLMMM GTGEVDSEKE 120
  121 LSELELSGIK EIMNQMMGHA ATAMSEMFQE KMDMTPPNVK FVTLKEEMEY LGESMEVDEL 180
  181 VQITFNLEIG DLLQSKMYQI LPISEAKEMV RRLL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	5.08
Match:	1xkrA
Description:	X-ray Structure of Thermotoga maritima CheC
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [433-546]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YPMVEEEEIV TEEIEEEKVV EPVVQPIEFK EVKQMEPVYM DTSILQNVEM NVKFVFGSTV  60
   61 KTIQDILSLQ ENEAVVLDED IDEPIRIYVN DVLVAYGELV NVDGFFGVKV TKSL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.30103
Match:	1o6aA
Description:	Crystal structure of the c-terminal fragment of the putative flagelar motor switch protein FliN (TM0680a) from Thermotoga maritima at 1.85 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
motor activity	3.07201707618408	bayes_pls_golite062009
nucleoside-triphosphatase activity	1.17271522721174	bayes_pls_golite062009
pyrophosphatase activity	1.12849207458848	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	1.10878539079436	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	1.10781034885807	bayes_pls_golite062009
binding	0.851616221377121	bayes_pls_golite062009
hydrolase activity	0.325371951256	bayes_pls_golite062009
protein binding	0.253452523212299	bayes_pls_golite062009
catalytic activity	0.145477743192426	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: