YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30262304, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	220 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30262304, gi|....

Description	E-value	Query Range	Subject Range
gi\|108756835, gi... - gi\|108756835\|ref\|YP_631971.1\| 3-oxoacid CoA-transferase subunit B [Myxococcus xanthus DK 1622], gi\|1...	1.0E-58	[3..219]	[1..216]
gi\|115379577, gi... - gi\|115379577\|ref\|ZP_01466665.1\| succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B [Stigmatell...	1.0E-58	[3..219]	[1..216]
gi\|94968193, gi\|... - gi\|94968193\|ref\|YP_590241.1\| butyryl-CoA:acetate CoA transferase [Candidatus Koribacter versatilis E...	7.0E-56	[5..220]	[13..228]
gi\|66781233, gi\|... - gi\|94984916\|ref\|YP_604280.1\| 3-oxoacid CoA-transferase, subunit B [Deinococcus geothermalis DSM 1130...	3.0E-55	[3..212]	[1..209]
gi\|15807735, gi\|... - gi\|6460542\|gb\|AAF12248.1\|AE001862_74 CoA transferase, subunit B [Deinococcus radiodurans R1], gi\|158... gi\|7471251 - pir\|\|E75600 butyrate-acetoacetate CoA-transferase (EC 2.8.3.9) large chain homolog DRA0067 [similari...	4.0E-55	[3..211]	[1..208]
gi\|115313679, gi... - gi\|182889136\|gb\|AAI64688.1\| Oxct1b protein [Danio rerio], gi\|116004513\|ref\|NP_001070618.1\| 3-oxoacid...	7.0E-55	[7..220]	[309..524]
gi\|56478100, gi\|... - gi\|56478100\|ref\|YP_159689.1\| succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B [Aromatoleum a...	1.0E-54	[7..214]	[4..211]
SCOT1_RAT - Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial OS=Rattus norvegicus GN=Oxct1 PE=1 S...	1.0E-54	[6..220]	[300..516]
tr\|E4REJ0\|E4REJ0... - 3-oxoacid CoA-transferase, B subunit OS=Pseudomonas putida (strain BIRD-1) GN=PPUBIRD1_2612 PE=4 SV=... gi\|82736381, gi\|... - gi\|82736381\|ref\|ZP_00899239.1\| Coenzyme A transferase active site [Pseudomonas putida F1], gi\|827164... tr\|I7AWC7\|I7AWC7... - 3-oxoacid CoA-transferase, B subunit OS=Pseudomonas putida (strain DOT-T1E) GN=ipsJ PE=4 SV=1	1.0E-54	[7..219]	[4..216]
gi\|26989842, gi\|... - gi\|26989842\|ref\|NP_745267.1\| 3-oxoacid CoA-transferase subunit B [Pseudomonas putida KT2440], gi\|249...	1.0E-54	[7..219]	[4..216]

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Predicted Domain #1

Region A:
Residues: [1-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGMGVEVRDK IARRAAKEIQ NGMIVNLGIG IPSLVPNHLP DDINVMFHAE NGIVGMGPTP  60
   61 SKGNEDENLC NAAGLPTSLI TGASYFDSCT AFGMIRKGLL DITILGSLQV SENGDLANWI 120
  121 VPGKRVPGIG GAMDLAQKAK RVVVVMNHVD KYGNAKIVSE CTLPLTSKKC VDLIITDMAV 180
  181 MEVTEGGLIL QELMSPYTVE DIKQHTEANF KIGSNLLVIE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.0
Match:	1oozA
Description:	Deletion mutant of SUCCINYL-COA:3-KETOACID COA TRANSFERASE FROM PIG HEART
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
3-oxoacid CoA-transferase activity	2.22792536321983	bayes_pls_golite062009
catalytic activity	1.68776709414398	bayes_pls_golite062009
CoA-transferase activity	0.50782945985068	bayes_pls_golite062009
transferase activity, transferring sulfur-containing groups	0.18413827683017	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: