YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258895, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258895, gi|....

Description	E-value	Query Range	Subject Range
gi\|4127534 - gi\|4127534\|emb\|CAA09426.1\| arginine repressor [Geobacillus stearothermophilus]	8.0E-48	[1..149]	[1..149]
ARGR_GEOKA - Arginine repressor OS=Geobacillus kaustophilus GN=argR PE=3 SV=1 gi\|221088855, gi... - gi\|221088855\|ref\|ZP_03558381.1\| arginine repressor, ArgR [Geobacillus sp. Y412MC61], gi\|220707216\|gb... ARGR_GEOKA - Arginine repressor OS=Geobacillus kaustophilus (strain HTA426) GN=argR PE=3 SV=1 gi\|229498343, gi... - gi\|229498343\|ref\|ZP_04392039.1\| arginine repressor, ArgR [Geobacillus sp. Y412MC52], gi\|229330714\|gb...	5.0E-47	[1..149]	[1..149]
gi\|89151193, gi\|... - gi\|89200812\|ref\|ZP_01179562.1\| Arginine repressor [Bacillus cereus subsp. cytotoxis NVH 391-98], gi\|...	2.0E-46	[1..149]	[1..149]
gi\|229061865, gi... - gi\|229061865\|ref\|ZP_04199195.1\| Arginine repressor [Bacillus cereus AH603], gi\|228717426\|gb\|EEL69094... gi\|228747805, gi... - gi\|229013393\|ref\|ZP_04170530.1\| Arginine repressor [Bacillus mycoides DSM 2048], gi\|228747805\|gb\|EEL... gi\|228614511, gi... - gi\|229168919\|ref\|ZP_04296636.1\| Arginine repressor [Bacillus cereus AH621], gi\|228614511\|gb\|EEK71619... ARGR_BACWK - Arginine repressor OS=Bacillus weihenstephanensis (strain KBAB4) GN=argR PE=3 SV=1 gi\|228648499, gi... - gi\|229134997\|ref\|ZP_04263803.1\| Arginine repressor [Bacillus cereus BDRD-ST196], gi\|228648499\|gb\|EEL...	3.0E-46	[1..149]	[1..149]
gi\|228590964, gi... - gi\|229192387\|ref\|ZP_04319350.1\| Arginine repressor [Bacillus cereus ATCC 10876], gi\|228590964\|gb\|EEK... gi\|229152377, gi... - gi\|229152377\|ref\|ZP_04280569.1\| Arginine repressor [Bacillus cereus m1550], gi\|228630985\|gb\|EEK87622... ARGR2_BACCR - Arginine repressor OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 93... gi\|218160763, gi... - gi\|218232806\|ref\|YP_002368978.1\| arginine repressor [Bacillus cereus B4264], gi\|218160763\|gb\|ACK6075... gi\|228849528, gi... - gi\|228910011\|ref\|ZP_04073831.1\| Arginine repressor [Bacillus thuringiensis IBL 200], gi\|228849528\|gb... gi\|218541565, gi... - gi\|218899339\|ref\|YP_002447750.1\| arginine repressor [Bacillus cereus G9842], gi\|218541565\|gb\|ACK9395... gi\|228856880, gi... - gi\|228902693\|ref\|ZP_04066840.1\| Arginine repressor [Bacillus thuringiensis IBL 4222], gi\|228856880\|g... gi\|206734038, gi... - gi\|206971266\|ref\|ZP_03232217.1\| arginine repressor [Bacillus cereus AH1134], gi\|206734038\|gb\|EDZ5120... gi\|228792585, gi... - gi\|228967216\|ref\|ZP_04128252.1\| Arginine repressor [Bacillus thuringiensis serovar sotto str. T04001... gi\|228799207, gi... - gi\|228960443\|ref\|ZP_04122094.1\| Arginine repressor [Bacillus thuringiensis serovar pakistani str. T1... gi\|228805118, gi... - gi\|228954461\|ref\|ZP_04116486.1\| Arginine repressor [Bacillus thuringiensis serovar kurstaki str. T03... gi\|228818262, gi... - gi\|228941336\|ref\|ZP_04103888.1\| Arginine repressor [Bacillus thuringiensis serovar berliner ATCC 107... gi\|229071682, gi... - gi\|229071682\|ref\|ZP_04204898.1\| Arginine repressor [Bacillus cereus F65185], gi\|228711413\|gb\|EEL6337... gi\|229047871, gi... - gi\|229047871\|ref\|ZP_04193447.1\| Arginine repressor [Bacillus cereus AH676], gi\|228723328\|gb\|EEL74697... gi\|228778797, gi... - gi\|228980861\|ref\|ZP_04141165.1\| Arginine repressor [Bacillus thuringiensis Bt407], gi\|228778797\|gb\|E... gi\|228785318, gi... - gi\|228974268\|ref\|ZP_04134837.1\| Arginine repressor [Bacillus thuringiensis serovar thuringiensis str... gi\|229146750, gi... - gi\|229146750\|ref\|ZP_04275115.1\| Arginine repressor [Bacillus cereus BDRD-ST24], gi\|228636578\|gb\|EEK9... gi\|228654060, gi... - gi\|229129455\|ref\|ZP_04258426.1\| Arginine repressor [Bacillus cereus BDRD-Cer4], gi\|228654060\|gb\|EEL0... gi\|228671785, gi... - gi\|229111650\|ref\|ZP_04241200.1\| Arginine repressor [Bacillus cereus Rock1-15], gi\|228671785\|gb\|EEL27... gi\|229081434, gi... - gi\|229081434\|ref\|ZP_04213934.1\| Arginine repressor [Bacillus cereus Rock4-2], gi\|228701849\|gb\|EEL543...	4.0E-46	[1..149]	[1..149]
gi\|21402226, gi\|... - gi\|65321560\|ref\|ZP_00394519.1\| COG1438: Arginine repressor [Bacillus anthracis str. A2012], ref\|NP_6...	5.0E-46	[1..149]	[1..149]
ARGR_BACSU - Arginine repressor OS=Bacillus subtilis GN=argR PE=1 SV=1 gi\|221323871 - gi\|221323871\|ref\|ZP_03605165.1\| arginine repressor [Bacillus subtilis subsp. subtilis str. SMY] gi\|221319595 - gi\|221319595\|ref\|ZP_03600889.1\| arginine repressor [Bacillus subtilis subsp. subtilis str. JH642] gi\|221314672 - gi\|221314672\|ref\|ZP_03596477.1\| arginine repressor [Bacillus subtilis subsp. subtilis str. NCIB 3610... ARGR_BACSU - Arginine repressor OS=Bacillus subtilis (strain 168) GN=argR PE=1 SV=1	1.0E-44	[1..149]	[1..149]
ARGR_BACHD - Arginine repressor OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / ... ARGR_BACHD - Arginine repressor OS=Bacillus halodurans GN=argR PE=3 SV=1	2.0E-44	[1..149]	[1..149]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKGQRHIKI REIIANKEIE TQDELVDILR NEGFNVTQAT VSRDIKELHL VKVPLHDGRY  60
   61 KYSLPADQRF NPLQKLKRNL VDSFVKLDTA GHMLVLKTLP GNAHSLGALI DHLEWDEIIG 120
  121 TICGDDTCLI ICRTPEDTGV VSDRFLNML

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.0
Match:	1b4aA
Description:	Arginine repressor (ArgR), N-terminal DNA-binding domain; C-terminal domain of arginine repressor
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	3.98990675336286	bayes_pls_golite062009
DNA binding	3.4273272886116	bayes_pls_golite062009
nucleic acid binding	3.38054693035398	bayes_pls_golite062009
transcription factor activity	2.80110428028438	bayes_pls_golite062009
binding	2.18911933843505	bayes_pls_golite062009
transcription activator activity	0.53294679084865	bayes_pls_golite062009
sequence-specific DNA binding	0.53285802828572	bayes_pls_golite062009
transcription repressor activity	0.513853050429619	bayes_pls_golite062009
protein binding	0.035220363090062	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: