YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259407, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	418 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259407, gi|....

Description	E-value	Query Range	Subject Range
SYY_GEOKA - Tyrosine--tRNA ligase OS=Geobacillus kaustophilus (strain HTA426) GN=tyrS PE=3 SV=1 SYY_GEOKA - Tyrosyl-tRNA synthetase OS=Geobacillus kaustophilus GN=tyrS PE=3 SV=1	0.0	[1..418]	[1..418]
SYY_BACCA - Tyrosine--tRNA ligase OS=Bacillus caldotenax GN=tyrS PE=3 SV=1	0.0	[1..418]	[1..418]
SYY_GEOSE - Tyrosine--tRNA ligase OS=Geobacillus stearothermophilus GN=tyrS PE=1 SV=1	0.0	[1..418]	[1..418]
gi\|89201621, gi\|... - gi\|89201621\|ref\|ZP_01180359.1\| Tyrosyl-tRNA synthetase, class Ib [Bacillus cereus subsp. cytotoxis N...	0.0	[1..418]	[1..418]
gi\|228903177, gi... - gi\|228903177\|ref\|ZP_04067311.1\| Tyrosyl-tRNA synthetase 1 [Bacillus thuringiensis IBL 4222], gi\|2288... gi\|75760723, gi\|... - gi\|75760723\|ref\|ZP_00740746.1\| Tyrosyl-tRNA synthetase [Bacillus thuringiensis serovar israelensis A... gi\|228954932, gi... - gi\|228954932\|ref\|ZP_04116950.1\| Tyrosyl-tRNA synthetase 1 [Bacillus thuringiensis serovar kurstaki s... gi\|228923415, gi... - gi\|228923415\|ref\|ZP_04086702.1\| Tyrosyl-tRNA synthetase 1 [Bacillus thuringiensis serovar huazhongen... gi\|228710903, gi... - gi\|229072165\|ref\|ZP_04205373.1\| Tyrosyl-tRNA synthetase 1 [Bacillus cereus F65185], gi\|228710903\|gb\|... gi\|206969502, gi... - gi\|206969502\|ref\|ZP_03230456.1\| tyrosyl-tRNA synthetase [Bacillus cereus AH1134], gi\|206735190\|gb\|ED... gi\|228960931, gi... - gi\|228960931\|ref\|ZP_04122564.1\| Tyrosyl-tRNA synthetase 1 [Bacillus thuringiensis serovar pakistani ... gi\|228602538, gi... - gi\|229180981\|ref\|ZP_04308316.1\| Tyrosyl-tRNA synthetase 1 [Bacillus cereus 172560W], gi\|228602538\|gb... gi\|218234669, gi... - gi\|218234669\|ref\|YP_002369456.1\| tyrosyl-tRNA synthetase [Bacillus cereus B4264], gi\|218162626\|gb\|AC... gi\|218542348, gi... - gi\|218899815\|ref\|YP_002448226.1\| tyrosyl-tRNA synthetase [Bacillus cereus G9842], gi\|218542348\|gb\|AC...	0.0	[1..418]	[1..418]
gi\|47565074, gi\|... - gi\|47565074\|ref\|ZP_00236117.1\| tyrosyl-tRNA synthetase [Bacillus cereus G9241], gi\|47557860\|gb\|EAL16...	0.0	[1..418]	[1..418]
gi\|163864586, gi... - gi\|89204155\|ref\|ZP_01182733.1\| Tyrosyl-tRNA synthetase, class Ib [Bacillus weihenstephanensis KBAB4]... gi\|228716949, gi... - gi\|229062344\|ref\|ZP_04199662.1\| Tyrosyl-tRNA synthetase 1 [Bacillus cereus AH603], gi\|228716949\|gb\|E... gi\|229169389, gi... - gi\|229169389\|ref\|ZP_04297099.1\| Tyrosyl-tRNA synthetase 1 [Bacillus cereus AH621], gi\|228614152\|gb\|E...	0.0	[1..418]	[1..418]
SYY1_BACC1 - Tyrosine--tRNA ligase 1 OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=tyrS1 PE=3 SV=1	0.0	[1..418]	[1..418]
gi\|21402705, gi\|... - gi\|65322029\|ref\|ZP_00394988.1\| COG0162: Tyrosyl-tRNA synthetase [Bacillus anthracis str. A2012], ref...	0.0	[1..418]	[1..418]
SYY1_BACCR - Tyrosine--tRNA ligase 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCI...	0.0	[1..418]	[1..418]

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Predicted Domain #1

Region A:
Residues: [1-418]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGILQDLEFR GLINQQTDAE GLEQLLEKES VKLYCGFDPT ADSLHIGHML PVLMLRRFQL  60
   61 AGHQPIALVG GGTGMIGDPS GKKAERTLNT KDTVAYYTES IKNQLSNFLE FENVENPATM 120
  121 ANNYDWLGNL DVISFLRDIG KNFGLNYMLA KDTVASRLET GISFTEFSYM ILQSYDFLNL 180
  181 YQHHNCRLQI GGSDQWGNIT AGLELIRKSE EDAKAFGLTI PLVTKSDGTK FGKTEGGAIW 240
  241 LDPEKTTPYE FYQFWINTDD RDVVKYLKYF TFLSHEEILE LEKQVAEAPE KRAAQKALGA 300
  301 EMTKLVHGEE ALEQAIKISA ALFSGSVAEL TASEIEQGFK DVPSVERTAE DTVLIDLLVE 360
  361 SKISPSKRQA REDVTNGAIY VNGERTQALD YVVTEKDRIE GKFTIIRRGK KKYFLIRY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	128.0
Match:	2ts1A
Description:	STRUCTURE OF TYROSYL-T/RNA SYNTHETASE REFINED AT 2.3 ANGSTROMS RESOLUTION. INTERACTION OF THE ENZYME WITH THE TYROSYL ADENYLATE INTERMEDIATE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ligase activity, forming carbon-oxygen bonds	7.16276509815667	bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds	7.16276509815667	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	7.13957775963187	bayes_pls_golite062009
tyrosine-tRNA ligase activity	6.18775771640881	bayes_pls_golite062009
ligase activity	6.11211476973434	bayes_pls_golite062009
glutamate-tRNA ligase activity	2.63681738794687	bayes_pls_golite062009
methionine-tRNA ligase activity	2.56893064485672	bayes_pls_golite062009
catalytic activity	2.37674226834122	bayes_pls_golite062009
arginine-tRNA ligase activity	1.50161401062914	bayes_pls_golite062009
tryptophan-tRNA ligase activity	1.14187887833901	bayes_pls_golite062009
cysteine-tRNA ligase activity	0.844943947059557	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.625793556381714	bayes_pls_golite062009
binding	0.485102284225571	bayes_pls_golite062009
nucleic acid binding	0.449504767632354	bayes_pls_golite062009
nucleotidyltransferase activity	0.2293846471193	bayes_pls_golite062009
glutamine-tRNA ligase activity	0.118292082006187	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: