YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259843, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	342 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259843, gi|....

Description	E-value	Query Range	Subject Range
gi\|89150817, gi\|... - gi\|89201230\|ref\|ZP_01179976.1\| Putative sugar-binding region [Bacillus cereus subsp. cytotoxis NVH 3...	0.0	[1..342]	[1..342]
gi\|29898735, gi\|... - gi\|30023175\|ref\|NP_834806.1\| central glycolytic genes regulator [Bacillus cereus ATCC 14579], gi\|298...	0.0	[1..342]	[6..347]
gi\|89157019, gi\|... - gi\|89205005\|ref\|ZP_01183578.1\| Putative sugar-binding region [Bacillus weihenstephanensis KBAB4], gi...	0.0	[1..342]	[1..342]
gi\|52005174, gi\|... - gi\|52787351\|ref\|YP_093180.1\| CggR [Bacillus licheniformis ATCC 14580], gi\|52349853\|gb\|AAU42487.1\| Cg...	0.0	[1..341]	[1..341]
CGGR_BACME - Central glycolytic genes regulator OS=Bacillus megaterium GN=cggR PE=3 SV=1 CGGR_BACMD - Central glycolytic genes regulator OS=Bacillus megaterium (strain DSM 319) GN=cggR PE=3 SV=1	0.0	[1..338]	[1..339]
gi\|25355520 - pir\|\|A84095 transcription regulator BH3561 [imported] - Bacillus halodurans (strain C-125) gi\|15616123, gi\|... - gi\|15616123\|ref\|NP_244428.1\| transcriptional regulator [Bacillus halodurans C-125], gi\|10176185\|dbj\|...	0.0	[1..339]	[1..339]
gi\|56421594, gi\|... - gi\|56421594\|ref\|YP_148912.1\| transcriptional regulator (central glycolytic gene regulator) [Geobacil...	0.0	[1..335]	[1..335]
gi\|25355521 - pir\|\|B96987 probable transcription regulator [imported] - Clostridium acetobutylicum gi\|15893996, gi\|... - gi\|15893996\|ref\|NP_347345.1\| putative transcriptional regulator [Clostridium acetobutylicum ATCC 824...	0.0	[1..338]	[1..338]
gi\|20516774, gi\|... - gi\|20808182\|ref\|NP_623353.1\| transcriptional regulator [Thermoanaerobacter tengcongensis MB4], gi\|20... gi\|20808182 - gi\|20808182\|ref\|NP_623353.1\| Transcriptional regulator, contains sigma factor-related N-terminal dom...	0.0	[1..340]	[1..340]
CGGR_BACSU - Central glycolytic genes regulator OS=Bacillus subtilis (strain 168) GN=cggR PE=1 SV=1 gi\|221324873 - gi\|221324873\|ref\|ZP_03606167.1\| transcriptional regulator [Bacillus subtilis subsp. subtilis str. SM... gi\|221320588 - gi\|221320588\|ref\|ZP_03601882.1\| transcriptional regulator [Bacillus subtilis subsp. subtilis str. JH... gi\|221315673 - gi\|221315673\|ref\|ZP_03597478.1\| transcriptional regulator [Bacillus subtilis subsp. subtilis str. NC... CGGR_BACSU - Central glycolytic genes regulator OS=Bacillus subtilis GN=cggR PE=1 SV=1	2.0E-98	[1..338]	[1..338]

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Predicted Domain #1

Region A:
Residues: [1-342]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSWIQNTKK LLPDLLPVMQ TRMQILQYIR LMQPIGRRNL SASLGMTERV LRSEVQVLKE  60
   61 QNLVHVASSG MTLTEEGTAL VLALEDFMKE ISGLKVLEKQ LKETLDLDEV FVVPGDSDES 120
  121 PWVKLEMGRA CVTCIKDRLT ANNIVAVAGG TTLAAVADMM QLDCKDLHML FVPARGGIGE 180
  181 GVELEANTIC AKMAQNTMSN YRLLYVPDHV SSEAYASIVT EPSVKEVLEL IRSSNIVIHG 240
  241 IGDALTMARR RNTSEADWLK IQASEAVGEA FGYYFNEQGN VVHKVRTVGM QLEDLQNVSH 300
  301 VVAVAGGSSK AKAIQAVIKQ GHTSILITDE GAAKQLTKGI TL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	94.522879
Match:	2o0mA
Description:	No description for 2o0mA was found.

Predicted functions:

Term	Confidence	Notes
intramolecular oxidoreductase activity, interconverting aldoses and ketoses	2.23796402493477	bayes_pls_golite062009
ribose-5-phosphate isomerase activity	1.8706764549668	bayes_pls_golite062009
intramolecular oxidoreductase activity	1.76533950728927	bayes_pls_golite062009
catalytic activity	1.68776709414398	bayes_pls_golite062009
nucleic acid binding	0.965520574888216	bayes_pls_golite062009
transcription regulator activity	0.769423781192988	bayes_pls_golite062009
isomerase activity	0.61588631681492	bayes_pls_golite062009
DNA binding	0.223734115868557	bayes_pls_golite062009
6-phosphogluconolactonase activity	0.219352404564701	bayes_pls_golite062009
binding	0.199466104892993	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: