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View Structure Prediction Details

Protein: gi|15887467, gi|...
Organism: Agrobacterium tumefaciens str. C58
Length: 96 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15887467, gi|....

Description E-value Query
Range
Subject
Range
gi|25522298 - gi|25522298|pir||AC2590 50S ribosomal protein L32 [imported] - Agrobacterium tumefaciens (strain C58...
gi|17934031, gi|... - gi|17934031|ref|NP_530821.1| 50S ribosomal protein L32 [Agrobacterium tumefaciens str. C58], gi|1773...
147.0 [0..3] [96..1]
gi|3006125 - gi|3006125|emb|CAA06176.1| hypothetical protein [Thermoanaerobacterium thermosaccharolyticum]
gi|3006125|emb|C... - hypothetical protein [Thermoanaerobacterium thermosaccharolyticum]
111.0 [0..26] [94..159]
RL32_JANSC - 50S ribosomal protein L32 OS=Jannaschia sp. (strain CCS1) GN=rpmF PE=3 SV=1
100.0 [0..36] [94..1]
RL32_RHOS5 - 50S ribosomal protein L32 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rpmF PE=3 SV...
99.0 [0..36] [94..1]
RL32_SILPO - 50S ribosomal protein L32 OS=Silicibacter pomeroyi GN=rpmF PE=3 SV=1
RL32_RUEPO - 50S ribosomal protein L32 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=rpmF PE=3...
99.0 [0..36] [92..1]
RL32_RHOS1 - 50S ribosomal protein L32 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rpmF PE=3 SV...
RL32_RHOS4 - 50S ribosomal protein L32 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 15...
98.0 [0..36] [94..1]
gi|86138661, gi|... - gi|86138661|ref|ZP_01057234.1| ribosomal protein L32 [Roseobacter sp. MED193], gi|85824721|gb|EAQ449...
98.0 [0..36] [95..1]
RL32_RHOCA - 50S ribosomal protein L32 OS=Rhodobacter capsulatus GN=rpmF PE=3 SV=3
97.0 [0..36] [94..1]
gi|49330007, gi|... - gi|49478451|ref|YP_037985.1| 50S ribosomal protein L32 [Bacillus thuringiensis serovar konkukian str...
gi|51975034, gi|... - gi|52141565|ref|YP_085264.1| 50S ribosomal protein L32 [Bacillus cereus E33L], gi|51975034|gb|AAU165...
gi|42738944, gi|... - gi|42783017|ref|NP_980264.1| 50S ribosomal protein L32 [Bacillus cereus ATCC 10987], gi|42738944|gb|...
gi|49186773, gi|... - gi|49186773|ref|YP_030025.1| 50S ribosomal protein L32 [Bacillus anthracis str. Sterne], gi|49180700...
97.0 [0..32] [92..32]
RL32_RUEST - 50S ribosomal protein L32 OS=Ruegeria sp. (strain TM1040) GN=rpmF PE=3 SV=1
97.0 [0..36] [92..1]

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Predicted Domain #1
Region A:
Residues: [1-96]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGMYKRAKFP ISRHPTFGLW FWPVPLFRRL SGVTKMAVPK RKTSPSKRGM RRSADGLKSA  60
   61 TYVEDKNSGE LRRPHHIDLK TGMYRGRQVL TPKESA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.09691
Match: 1nwxZ
Description: 50S subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 10.1409163233998 bayes_pls_golite062009
structural molecule activity 9.56329613896852 bayes_pls_golite062009
binding 0.771742139617439 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle