YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15887467, gi\|...
Organism:	Agrobacterium tumefaciens str. C58
Length:	96 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15887467, gi|....

Description	E-value	Query Range	Subject Range
gi\|25522298 - gi\|25522298\|pir\|\|AC2590 50S ribosomal protein L32 [imported] - Agrobacterium tumefaciens (strain C58... gi\|17934031, gi\|... - gi\|17934031\|ref\|NP_530821.1\| 50S ribosomal protein L32 [Agrobacterium tumefaciens str. C58], gi\|1773...	147.0	[0..3]	[96..1]
gi\|3006125 - gi\|3006125\|emb\|CAA06176.1\| hypothetical protein [Thermoanaerobacterium thermosaccharolyticum] gi\|3006125\|emb\|C... - hypothetical protein [Thermoanaerobacterium thermosaccharolyticum]	111.0	[0..26]	[94..159]
RL32_JANSC - 50S ribosomal protein L32 OS=Jannaschia sp. (strain CCS1) GN=rpmF PE=3 SV=1	100.0	[0..36]	[94..1]
RL32_RHOS5 - 50S ribosomal protein L32 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rpmF PE=3 SV...	99.0	[0..36]	[94..1]
RL32_SILPO - 50S ribosomal protein L32 OS=Silicibacter pomeroyi GN=rpmF PE=3 SV=1 RL32_RUEPO - 50S ribosomal protein L32 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=rpmF PE=3...	99.0	[0..36]	[92..1]
RL32_RHOS1 - 50S ribosomal protein L32 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rpmF PE=3 SV... RL32_RHOS4 - 50S ribosomal protein L32 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 15...	98.0	[0..36]	[94..1]
gi\|86138661, gi\|... - gi\|86138661\|ref\|ZP_01057234.1\| ribosomal protein L32 [Roseobacter sp. MED193], gi\|85824721\|gb\|EAQ449...	98.0	[0..36]	[95..1]
RL32_RHOCA - 50S ribosomal protein L32 OS=Rhodobacter capsulatus GN=rpmF PE=3 SV=3	97.0	[0..36]	[94..1]
gi\|49330007, gi\|... - gi\|49478451\|ref\|YP_037985.1\| 50S ribosomal protein L32 [Bacillus thuringiensis serovar konkukian str... gi\|51975034, gi\|... - gi\|52141565\|ref\|YP_085264.1\| 50S ribosomal protein L32 [Bacillus cereus E33L], gi\|51975034\|gb\|AAU165... gi\|42738944, gi\|... - gi\|42783017\|ref\|NP_980264.1\| 50S ribosomal protein L32 [Bacillus cereus ATCC 10987], gi\|42738944\|gb\|... gi\|49186773, gi\|... - gi\|49186773\|ref\|YP_030025.1\| 50S ribosomal protein L32 [Bacillus anthracis str. Sterne], gi\|49180700...	97.0	[0..32]	[92..32]
RL32_RUEST - 50S ribosomal protein L32 OS=Ruegeria sp. (strain TM1040) GN=rpmF PE=3 SV=1	97.0	[0..36]	[92..1]

Back

Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGMYKRAKFP ISRHPTFGLW FWPVPLFRRL SGVTKMAVPK RKTSPSKRGM RRSADGLKSA  60
   61 TYVEDKNSGE LRRPHHIDLK TGMYRGRQVL TPKESA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.09691
Match:	1nwxZ
Description:	50S subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	10.1409163233998	bayes_pls_golite062009
structural molecule activity	9.56329613896852	bayes_pls_golite062009
binding	0.771742139617439	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: