YRC Public Data Repository - Protein Structure Prediction

Protein:	RS19_SYNE7
Organism:	Synechococcus elongatus PCC 7942
Length:	91 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS19_SYNE7.

Description	E-value	Query Range	Subject Range
RS19_TRIEI - 30S ribosomal protein S19 OS=Trichodesmium erythraeum (strain IMS101) GN=rpsS PE=3 SV=1	145.0	[0..1]	[91..1]
gi\|221089326, gi... - gi\|221089326\|ref\|ZP_03558846.1\| ribosomal protein S19 [Geobacillus sp. Y412MC61], gi\|220706752\|gb\|EE... RS19_GEOKA - 30S ribosomal protein S19 OS=Geobacillus kaustophilus (strain HTA426) GN=rpsS PE=3 SV=1 RS19_GEOKA - 30S ribosomal protein S19 OS=Geobacillus kaustophilus GN=rpsS PE=3 SV=1	145.0	[0..1]	[91..1]
RS19_GRABC - 30S ribosomal protein S19 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rpsS PE=...	145.0	[0..1]	[91..1]
RS19_CHESB - 30S ribosomal protein S19 OS=Chelativorans sp. (strain BNC1) GN=rpsS PE=3 SV=1	144.0	[0..1]	[91..1]
RS19_MARHV - 30S ribosomal protein S19 OS=Marinobacter hydrocarbonoclasticus (strain ATCC 700491 / DSM 11845 / VT... gi\|149376680, gi... - gi\|149376680\|ref\|ZP_01894439.1\| ribosomal protein S19 [Marinobacter algicola DG893], gi\|149359053\|gb...	143.0	[0..1]	[91..1]
RS19_ERYLH - 30S ribosomal protein S19 OS=Erythrobacter litoralis (strain HTCC2594) GN=rpsS PE=3 SV=1	143.0	[0..1]	[91..1]
gi\|85690587, gi\|... - gi\|85709053\|ref\|ZP_01040119.1\| 30S ribosomal protein S19 [Erythrobacter sp. NAP1], gi\|85690587\|gb\|EA...	143.0	[0..1]	[91..1]
RS19_IDILO - 30S ribosomal protein S19 OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) GN=rpsS... RS19_IDILO - 30S ribosomal protein S19 OS=Idiomarina loihiensis GN=rpsS PE=3 SV=1	143.0	[0..1]	[91..1]
gi\|88776053, gi\|... - gi\|88801215\|ref\|ZP_01116756.1\| ribosomal protein S19 [Reinekea sp. MED297], gi\|88776053\|gb\|EAR07287....	143.0	[0..1]	[91..1]
RS19_HYPNA - 30S ribosomal protein S19 OS=Hyphomonas neptunium (strain ATCC 15444) GN=rpsS PE=3 SV=1	143.0	[0..1]	[91..1]

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Predicted Domain #1

Region A:
Residues: [1-91]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARSLKKGPF VADHLLRKVE KLNAKGDKQV IKTWSRASTI LPQMIGHTIA VHNGRQHVPV  60
   61 YVTEQMVGHK LGEFAPTRTF RGHTKDKKAG R

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.39794
Match:	2gy9S
Description:	No description for 2gy9S was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.93798084434094	bayes_pls_golite062009
structural molecule activity	9.3625249805433	bayes_pls_golite062009
binding	1.31016553389632	bayes_pls_golite062009
protein binding	0.597909497479366	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: