YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|6683933
Organism:	Plasmodium falciparum
Length:	398 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6683933.

Description	E-value	Query Range	Subject Range
gi\|6683935, gi\|6... - gi\|6683935\|gb\|AAF23401.1\| rhoptry-associated protein 2; RAP2 [Plasmodium falciparum], gi\|6118349\|gb\|...	624.0	[0..1]	[398..1]
gi\|23504501, gi\|... - gi\|23613039\|ref\|NP_703361.1\| rhoptry-associated protein, putative [Plasmodium falciparum 3D7], gi\|23...	571.0	[0..1]	[398..1]
gi\|23478687 - gi\|23478687\|gb\|EAA15706.1\| RAP2, putative [Plasmodium yoelii yoelii] gi\|82539519 - gi\|82539519\|ref\|XP_724141.1\| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]	523.0	[0..1]	[394..1]
gi\|68064534 - gi\|68064534\|ref\|XP_674251.1\| rhoptry-associated protein [Plasmodium berghei strain ANKA] gi\|56492690 - gi\|56492690\|emb\|CAI03992.1\| rhoptry-associated protein, putative [Plasmodium berghei]	408.0	[0..7]	[394..1]
gi\|72388793 - gi\|72388793\|gb\|AAZ68036.1\| rhoptry-associated protein 2 [Plasmodium vivax]	379.0	[0..1]	[394..1]
gi\|56522777 - gi\|56522777\|emb\|CAH74690.1\| rhoptry-associated protein, putative [Plasmodium chabaudi chabaudi] gi\|70947428 - gi\|70947428\|ref\|XP_743330.1\| rhoptry-associated protein [Plasmodium chabaudi chabaudi]	325.0	[0..1]	[395..1]

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Predicted Domain #1

Region A:
Residues: [1-203]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLKFYVLVF LILCLKNVVK GDKCETEFSK LYPESNSLTG LIYAHTANVH KLSMWVYFIY  60
   61 NHFSSADELI KYLEKTNINT LENSDHTCFA RAVTLYLFYY YLKDIKSMLS TDDYQSFFKN 120
  121 KFKDINPLFI NDFILILNDK KFMENLDLYI MKESEREHLV IKKNPFLRVL NKASTTTHAT 180
  181 YKSNPYFIVG SRVHTPYKDY LGD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [204-398]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FNKYTEISVL NYVRDYNFLI YAGSRENYYN SDIAGPARSV NNVISKNKTL GLRKRSSSLA  60
   61 LVGTNNNDPI FAYCEKDNKS EYYGTPDDLI TSFFSIIKTK MLNSHKTFLR QFDYALFHKT 120
  121 YSIPNLKGFR FLKHLFQKKN LVNFVGMYEN HVSTEINFLA EDFVELFDVT MDCYSRQYSN 180
  181 RAAENFKAIR ELNVL