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View Structure Prediction Details

Protein: TIF4A_ARATH
Organism: Arabidopsis thaliana
Length: 313 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TIF4A_ARATH.

Description E-value Query
Range
Subject
Range
gi|7268177, gi|7... - pir||H71409 hypothetical protein - Arabidopsis thaliana, gi|7268177|emb|CAB78513.1| hypothetical pro...
330.0 [0..1] [312..335]

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Predicted Domain #1
Region A:
Residues: [1-152]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVGVSPAKS ILAKPLKLLT EEDISQLTRE DCRKFLKDKG MRRPSWNKSQ AIQQVLSLKA  60
   61 LYEPGDDSGA GIFRKILVSQ PVNPPRVTTT LIEPSNELEA CGRVSYPEDN GACHRMDSPR 120
  121 SAEFSGGSGH FVSEKDGHKT TISPRSPAET SE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [153-313]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LVGQMTIFYS GKVNVYDGIP PEKARSIMHF AANPIDLPEN GIFASSRMIS KLISKEKMME  60
   61 LPQKGLEKAN SSRDSGMEGQ ANRKVSLQRY REKRKDRKFS KAKKCPGVAS SSLEMFLNCQ 120
  121 PRMKAAYSQN LGCTGSPLHS QSPESQTKSP NLSVDLNSEG I

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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