YRC Public Data Repository - Protein Structure Prediction

Protein:	RK14_NEPOL
Organism:	Nephroselmis olivacea
Length:	121 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RK14_NEPOL.

Description	E-value	Query Range	Subject Range
RL14_SYMTH - 50S ribosomal protein L14 OS=Symbiobacterium thermophilum (strain T / IAM 14863) GN=rplN PE=3 SV=1 RL14_SYMTH - 50S ribosomal protein L14 OS=Symbiobacterium thermophilum GN=rplN PE=3 SV=1	187.0	[0..1]	[121..1]
gi\|89516786, gi\|... - gi\|89891142\|ref\|ZP_01202650.1\| 50S ribosomal protein L14 RplN [Flavobacteria bacterium BBFL7], gi\|89...	184.0	[0..1]	[121..1]
gi\|86141150, gi\|... - gi\|86141150\|ref\|ZP_01059696.1\| ribosomal protein L14 [Flavobacterium sp. MED217], gi\|85831709\|gb\|EAQ... gi\|86141150, gi\|... - gi\|86141150\|ref\|ZP_01059696.1\| ribosomal protein L14 [Flavobacterium sp. MED217], gi\|85831709\|gb\|EAQ...	184.0	[0..1]	[121..1]
gi\|83720943, gi\|... - gi\|83720943\|ref\|YP_443562.1\| ribosomal protein L14 [Burkholderia thailandensis E264], gi\|83654768\|gb...	183.0	[0..1]	[121..61]
gi\|105894482, gi... - gi\|107024293\|ref\|YP_622620.1\| ribosomal protein L14 [Burkholderia cenocepacia AU 1054], gi\|105894482...	183.0	[0..1]	[121..58]
RL14_THEEB - 50S ribosomal protein L14 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplN PE=3 SV=1 RL14_SYNEL - 50S ribosomal protein L14 OS=Synechococcus elongatus GN=rplN PE=3 SV=1	183.0	[0..1]	[121..1]
gi\|88786040, gi\|... - gi\|88805161\|ref\|ZP_01120681.1\| 50S ribosomal protein L14 [Robiginitalea biformata HTCC2501], gi\|8878...	182.0	[0..1]	[121..1]
RL14_SYNY3 - 50S ribosomal protein L14 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rplN PE=1 SV=1 gi\|7440830 - pir\|\|S77492 ribosomal protein L14 - Synechocystis sp. (strain PCC 6803) RL14_SYNY3 - 50S ribosomal protein L14 OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=rplN PE=3 SV=...	182.0	[0..1]	[121..1]
gi\|83856575, gi\|... - gi\|83856575\|ref\|ZP_00950104.1\| ribosomal protein L14 [Croceibacter atlanticus HTCC2559], gi\|83850375...	182.0	[0..1]	[121..1]
gi\|86132554, gi\|... - gi\|86132554\|ref\|ZP_01051147.1\| ribosomal protein L14 [Cellulophaga sp. MED134], gi\|85816796\|gb\|EAQ37...	182.0	[0..1]	[121..1]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQPQTILQV ADNSGARQLM CIRVLGGRKR YASIGDVIIA VVKDAIPNMP VKKSDVVRAV  60
   61 VVRTSKPVRR DTGMLIRFDD NAAVIVNQEG NPRGTRVFGP VARELRDRQF MKIISLAPEV 120
  121 L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.69897
Match:	1vsaI
Description:	No description for 1vsaI was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	10.0077098174023	bayes_pls_golite062009
structural molecule activity	9.43117206427219	bayes_pls_golite062009
binding	0.747530931796963	bayes_pls_golite062009
protein binding	0.11675780767527	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: