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View Structure Prediction Details

Protein: ALFL5_ARATH
Organism: Arabidopsis thaliana
Length: 260 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ALFL5_ARATH.

Description E-value Query
Range
Subject
Range
ALFIN_MEDSA - PHD finger protein Alfin1 OS=Medicago sativa GN=ALFIN-1 PE=1 SV=1
302.0 [0..1] [259..1]

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Predicted Domain #1
Region A:
Residues: [1-115]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGGTAHYSP RTVEEVFRDF KGRRAGIIQA LTTDVEDFFQ QCDPEKQNLC LYGFPNEVWE  60
   61 VNLPAEEVPP ELPEPALGIN FARDGMQERN WLSLVAVHSD AWLLSVSFYF GSRFG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [116-202]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FDRADRKRLF SMINEVPTVY EVVTGNAEKQ TKEMPSSANQ NGNRSKSNSK MRGLESKSSK  60
   61 TIHAKDEEEG LELEEGEEEE DEDEDEH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [203-260]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GETLCGACGD NYASDEFWIC CDMCEKWFHG ECVKITPARA EHIKHYKCPT CSNKRARP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.0
Match: 2f6jA
Description: No description for 2f6jA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle