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View Structure Prediction Details

Protein: ALFL5_ARATH
Organism: Arabidopsis thaliana
Length: 260 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ALFL5_ARATH.

Description E-value Query
Range
Subject
Range
ALFIN_MEDSA - PHD finger protein Alfin1 OS=Medicago sativa GN=ALFIN-1 PE=1 SV=1
302.0 [0..1] [259..1]

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Predicted Domain #1
Region A:
Residues: [1-115]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGGTAHYSP RTVEEVFRDF KGRRAGIIQA LTTDVEDFFQ QCDPEKQNLC LYGFPNEVWE  60
   61 VNLPAEEVPP ELPEPALGIN FARDGMQERN WLSLVAVHSD AWLLSVSFYF GSRFG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [116-202]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FDRADRKRLF SMINEVPTVY EVVTGNAEKQ TKEMPSSANQ NGNRSKSNSK MRGLESKSSK  60
   61 TIHAKDEEEG LELEEGEEEE DEDEDEH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [203-260]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GETLCGACGD NYASDEFWIC CDMCEKWFHG ECVKITPARA EHIKHYKCPT CSNKRARP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.0
Match: 2f6jA
Description: No description for 2f6jA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle