YRC Public Data Repository - Protein Structure Prediction

Protein:	SODM_DEIRA
Organism:	Deinococcus radiodurans R1
Length:	211 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SODM_DEIRA.

Description	E-value	Query Range	Subject Range
gi\|61679581, gi\|... - gi\|61679584\|pdb\|1Y67\|D Chain D, Crystal Structure Of Manganese Superoxide Dismutase From Deinococcus...	7.0E-86	[2..211]	[3..212]
gi\|94984937, gi\|... - gi\|94984937\|ref\|YP_604301.1\| superoxide dismutase [Deinococcus geothermalis DSM 11300], gi\|94555218\|...	7.0E-85	[1..211]	[1..208]
SODM_GEOSE - Superoxide dismutase [Mn] OS=Geobacillus stearothermophilus GN=sodA PE=1 SV=2	5.0E-83	[1..211]	[1..202]
gi\|227177082, gi... - gi\|227553829\|ref\|ZP_03983878.1\| Mn superoxide dismutase [Enterococcus faecalis HH22], gi\|227177082\|g... SODM_ENTFA - Superoxide dismutase [Fe] OS=Enterococcus faecalis (strain ATCC 700802 / V583) GN=sodA PE=3 SV=1 SODM_ENTFA - Superoxide dismutase [Fe] OS=Enterococcus faecalis GN=sodA PE=3 SV=1	1.0E-82	[1..211]	[1..202]
gi\|229330794, gi... - gi\|229498423\|ref\|ZP_04392119.1\| Superoxide dismutase [Geobacillus sp. Y412MC52], gi\|229330794\|gb\|EEN... gi\|220706675, gi... - gi\|221089386\|ref\|ZP_03558905.1\| Superoxide dismutase [Geobacillus sp. Y412MC61], gi\|220706675\|gb\|EED... gi\|56420992, gi\|... - gi\|56420992\|ref\|YP_148310.1\| manganese superoxide dismutase [Geobacillus kaustophilus HTA426], gi\|56... gi\|7578509 - gi\|7578509\|gb\|AAF64074.1\|AF147780_1 superoxide dismutase [Geobacillus thermoleovorans] SODM_BACCA - Superoxide dismutase [Mn] OS=Bacillus caldotenax GN=sodA PE=3 SV=2	1.0E-82	[1..211]	[1..202]
SODM_BACHD - Superoxide dismutase [Mn] OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM ... SODM_BACHD - Superoxide dismutase [Mn] OS=Bacillus halodurans GN=sodA PE=3 SV=1	4.0E-82	[1..211]	[1..202]
gi\|3320377 - gi\|3320377\|gb\|AAC26483.1\| manganese superoxide dismutase [Vibrio alginolyticus]	1.0E-81	[1..210]	[1..201]
gi\|7798571 - gi\|7798571\|dbj\|BAA95631.1\| superoxide dismutase [Geobacillus thermoleovorans]	2.0E-81	[1..211]	[1..202]

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Predicted Domain #1

Region A:
Residues: [1-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYTLPQLPY AYDALEPHID ARTMEIHHTK HHQTYVDNAN KALEGTEFAD LPVEQLIQQL  60
   61 DRVPADKKGA LRNNAGGHAN HSMFWQIMGQ GQGQNGANQP SGELLDAINS AFGSFDAFKQ 120
  121 KFEDAAKTRF GSGWAWLVVK DGKLDVVSTA NQDNPLMGEA IAGVSGTPIL GVDVWEHAYY 180
  181 LNYQNRRPDY LAAFWNVVNW DEVSKRYAAA K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	87.30103
Match:	1y67A
Description:	Crystal Structure of Manganese Superoxide Dismutase from Deinococcus radiodurans
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
superoxide dismutase activity	7.08472506566271	bayes_pls_golite062009
oxidoreductase activity, acting on superoxide radicals as acceptor	7.08472506566271	bayes_pls_golite062009
oxidoreductase activity	2.73079314406851	bayes_pls_golite062009
protein binding	1.36581969443298	bayes_pls_golite062009
binding	1.30562201415299	bayes_pls_golite062009
antioxidant activity	0.766723962166325	bayes_pls_golite062009
cation binding	0.485672227923388	bayes_pls_golite062009
metal ion binding	0.485672227923388	bayes_pls_golite062009
ion binding	0.480092270451566	bayes_pls_golite062009
catalytic activity	0.390489225704392	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: