YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|542173856\|ref...
Organism:	Zonotrichia albicollis
Length:	136 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|542173856|ref....

Description	E-value	Query Range	Subject Range
gi\|60653339 - gi\|60653339\|gb\|AAX29364.1\| ribosomal protein L27 [synthetic construct]	6.0E-58	[1..136]	[1..136]
gi\|445615 - gi\|445615\|prf\|\|1909362A ribosomal protein L27	3.0E-57	[1..136]	[1..136]
RL27_HIPCM - 60S ribosomal protein L27 OS=Hippocampus comes GN=rpl27 PE=2 SV=2	4.0E-57	[1..136]	[1..136]
RL27_CANLF - 60S ribosomal protein L27 OS=Canis lupus familiaris GN=RPL27 PE=2 SV=3	6.0E-57	[1..136]	[1..136]
gi\|109512048, gi... - gi\|109512048\|ref\|XP_001068936.1\| PREDICTED: similar to ribosomal protein L27 [Rattus norvegicus], gi...	8.0E-57	[1..136]	[1..136]
RL27_DANRE - 60S ribosomal protein L27 OS=Danio rerio GN=rpl27 PE=2 SV=3	2.0E-56	[1..136]	[1..136]
gi\|148235638, gi... - gi\|34193964\|gb\|AAH56506.1\| Rpl27-prov protein [Xenopus laevis], gi\|148235638\|ref\|NP_001080423.1\| rib... gi\|62859151, gi\|... - gi\|89268262\|emb\|CAJ82533.1\| ribosomal protein L27 [Xenopus tropicalis], gi\|62859151\|ref\|NP_001016180...	3.0E-56	[1..136]	[1..136]
gi\|82907223, gi\|... - gi\|94382507\|ref\|XP_995001.1\| PREDICTED: similar to ribosomal protein L27 [Mus musculus], gi\|82907223...	3.0E-56	[1..136]	[1..136]
RL27_ICTPU - 60S ribosomal protein L27 OS=Ictalurus punctatus GN=rpl27 PE=2 SV=3	1.0E-55	[1..136]	[1..136]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKFMKPGKV VLVLAGRYSG RKAVIVKNID DGTSDRPYSH ALVAGIDRYP RKVTAAMGKK  60
   61 KIAKRSKIKS FVKVYNYNHL MPTRYSVDIP LDKTVVNKDV FRDPALKRKA RREAKVKFEE 120
  121 RYKTGKNKWF FQKLRF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.09
Match:	2joyA
Description:	No description for 2joyA was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.33175622373475	bayes_pls_golite062009
structural molecule activity	8.78104488316498	bayes_pls_golite062009
translation elongation factor activity	2.67300686401704	bayes_pls_golite062009
binding	1.53082494948413	bayes_pls_golite062009
RNA binding	1.34286989242843	bayes_pls_golite062009
nucleic acid binding	1.34250569976274	bayes_pls_golite062009
transcription regulator activity	1.24801565562229	bayes_pls_golite062009
DNA binding	0.817602006068725	bayes_pls_golite062009
protein binding	0.247509245072821	bayes_pls_golite062009
transcription factor activity	0.151888933180377	bayes_pls_golite062009
translation regulator activity	0.084754562593104	bayes_pls_golite062009
translation factor activity, nucleic acid binding	0.0564075582229911	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: