YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11347575
Organism:	Pseudomonas aeruginosa
Length:	290 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11347575.

Description	E-value	Query Range	Subject Range
gi\|115588934, gi... - gi\|53726896\|ref\|ZP_00140398.2\| COG1475: Predicted transcriptional regulators [Pseudomonas aeruginosa...	1.0E-71	[1..290]	[1..290]
gi\|84324801, gi\|... - gi\|84324801\|ref\|ZP_00972855.1\| COG1475: Predicted transcriptional regulators [Pseudomonas aeruginosa...	4.0E-71	[1..290]	[1..290]
PARB_PSEPU - Probable chromosome-partitioning protein ParB OS=Pseudomonas putida GN=parB PE=3 SV=1 gi\|82716323, gi\|... - gi\|82736592\|ref\|ZP_00899449.1\| ParB-like partition protein [Pseudomonas putida F1], gi\|82716323\|gb\|E... tr\|I7B3W4\|I7B3W4... - Putative chromosome-partitioning protein parB OS=Pseudomonas putida (strain DOT-T1E) GN=parB PE=4 SV... PARB_PSEPK - Probable chromosome-partitioning protein ParB OS=Pseudomonas putida (strain KT2440) GN=parB PE=3 SV=... tr\|E4R9K8\|E4R9K8... - ParB OS=Pseudomonas putida (strain BIRD-1) GN=parB PE=4 SV=1	1.0E-70	[1..290]	[1..290]
gi\|95113429 - gi\|95113429\|emb\|CAK18157.1\| Chromosomal partitioning protein ParB [Pseudomonas entomophila L48] gi\|95113429, gi\|... - gi\|95113429\|emb\|CAK18157.1\| Chromosomal partitioning protein ParB [Pseudomonas entomophila L48], gi\|...	1.0E-70	[1..290]	[1..290]
gi\|150961051, gi... - gi\|94417271\|ref\|ZP_01297090.1\| hypothetical protein PaerP_01001070 [Pseudomonas aeruginosa PA7], gi\|...	2.0E-70	[1..290]	[1..290]
gi\|28872706, gi\|... - gi\|28872706\|ref\|NP_795325.1\| ParB family protein [Pseudomonas syringae pv. tomato str. DC3000], gi\|2... gi\|213926739, gi... - gi\|213968451\|ref\|ZP_03396594.1\| ParB family protein [Pseudomonas syringae pv. tomato T1], gi\|2139267... tr\|Q87TS6\|Q87TS6... - ParB family protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_5607 PE=4 SV=1	2.0E-69	[1..290]	[1..290]
gi\|77385958, gi\|... - gi\|77461955\|ref\|YP_351462.1\| chromosome segregation DNA-binding protein [Pseudomonas fluorescens Pf0...	3.0E-69	[1..290]	[1..290]
gi\|68347805, gi\|... - gi\|70733506\|ref\|YP_263281.1\| chromosome partitioning protein ParB [Pseudomonas fluorescens Pf-5], gi...	4.0E-69	[1..290]	[1..290]
gi\|63259060, gi\|... - gi\|66048353\|ref\|YP_238194.1\| ParB-like partition protein [Pseudomonas syringae pv. syringae B728a], ...	4.0E-69	[1..290]	[1..290]
gi\|71555363, gi\|... - gi\|71734810\|ref\|YP_277288.1\| chromosome partitioning protein ParB [Pseudomonas syringae pv. phaseoli...	5.0E-69	[1..290]	[1..290]

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Predicted Domain #1

Region A:
Residues: [1-290]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAKKRGLGR GLDALLGGSS PAKLQEEAVQ ADRRELQQIP LDLMQRGKYQ PRRDMDPQAL  60
   61 EELAQSIKAQ GVMQPIVVRP IANGRYEIIA GERRWRASQQ AGLEKIPALV RDVPDEAAIA 120
  121 MALIENIQRE DLNPIEEAAA LQRLQQEFQL TQQQVAEAVG KSRATITNLL RLIGLPEEIK 180
  181 TLLSHGDLEM GHARALLGLP AERQVEGARH VVAHGLTVRQ TEALVRQWTH APGKPAGPVK 240
  241 SDPDIARLEQ RLAERLGASV QIRHGQKGKG QLVIRYSSLD ELQGVLAHIR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.221849
Match:	1vz0A
Description:	Chromosome segregation protein Spo0J from Thermus thermophilus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.895085828217607	bayes_pls_golite062009
DNA binding	0.0408978596954372	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: