YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|9948309, gi\|1...
Organism:	Pseudomonas aeruginosa PAO1
Length:	230 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9948309, gi|1....

Description	E-value	Query Range	Subject Range
gi\|94416526, gi\|... - gi\|94416526\|ref\|ZP_01296351.1\| hypothetical protein PaerP_01001607 [Pseudomonas aeruginosa PA7], gi\|...	7.0E-59	[1..230]	[1..230]
gi\|126167222, gi... - gi\|84321002\|ref\|ZP_00969368.1\| COG0431: Predicted flavoprotein [Pseudomonas aeruginosa C3719], gi\|25... gi\|218771972, gi... - gi\|218891746\|ref\|YP_002440613.1\| putative arsenical resistance protein [Pseudomonas aeruginosa LESB5... gi\|107101726 - gi\|107101726\|ref\|ZP_01365644.1\| hypothetical protein PaerPA_01002770 [Pseudomonas aeruginosa PACS2]	8.0E-59	[1..230]	[1..230]
gi\|26989434, gi\|... - gi\|26989434\|ref\|NP_744859.1\| arsH protein [Pseudomonas putida KT2440], gi\|24984300\|gb\|AAN68323.1\|AE0...	1.0E-58	[1..230]	[1..233]
gi\|115585448, gi... - gi\|32042414\|ref\|ZP_00139997.1\| COG0431: Predicted flavoprotein [Pseudomonas aeruginosa UCBPP-PA14], ...	2.0E-58	[1..230]	[1..230]
gi\|254240720, gi... - gi\|84327316\|ref\|ZP_00975337.1\| COG0431: Predicted flavoprotein [Pseudomonas aeruginosa 2192], gi\|254...	6.0E-58	[1..230]	[1..230]
gi\|82735191, gi\|... - gi\|82735191\|ref\|ZP_00898054.1\| ArsH protein [Pseudomonas putida F1], gi\|82717866\|gb\|EAP52917.1\| ArsH...	6.0E-58	[1..230]	[1..233]
gi\|49081894 - gi\|49081894\|gb\|AAT50347.1\| PA2280 [synthetic construct]	9.0E-58	[1..230]	[1..230]
gi\|48729362, gi\|... - gi\|77458624\|ref\|YP_348129.1\| NADPH-dependent FMN reductase [Pseudomonas fluorescens Pf0-1], gi\|77382...	5.0E-56	[1..230]	[1..229]
gi\|70729552, gi\|... - gi\|70729552\|ref\|YP_259290.1\| arsH protein [Pseudomonas fluorescens Pf-5], gi\|68343851\|gb\|AAY91457.1\|...	1.0E-55	[1..230]	[1..232]

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Predicted Domain #1

Region A:
Residues: [1-230]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEQLPNLDP ALLGDPPPVS GHRPRILLLY GSTRERSFSR LLVLEAARLL ERFGAETRIF  60
   61 DPSGLPLPDD APVEHPKVRE LRDLVQWSEG QVWCSPERHG ALSAVFKAQI DWIPLALGAV 120
  121 RPTQGKTLAL MQVCGGSQSF NVVNQLRVLG RWMRMFTIPN QSSVPKAYLE FDEAGRMKPS 180
  181 PYYDRVVDVM EELFKFTLLL RERTDFLVDR YSERKESAEQ LSARVDQRSL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.30103
Match:	2fzvA
Description:	Crystal Structure of an apo form of a Flavin-binding Protein from Shigella flexneri
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.0900331685337271	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: