YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260012, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	239 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260012, gi|....

Description	E-value	Query Range	Subject Range
gi\|152977498, gi... - gi\|89202683\|ref\|ZP_01181397.1\| H+-transporting two-sector ATPase, A subunit [Bacillus cereus subsp. ...	6.0E-51	[1..239]	[1..239]
ATPI_ANTFO - ATP synthase subunit a, chloroplastic OS=Anthoceros formosae GN=atpI PE=2 SV=1	3.0E-50	[5..239]	[26..248]
gi\|206970310, gi... - gi\|206970310\|ref\|ZP_03231263.1\| ATP synthase F0, A subunit [Bacillus cereus AH1134], gi\|206734887\|gb... gi\|218159050, gi... - gi\|218231093\|ref\|YP_002370087.1\| ATP synthase F0, A subunit [Bacillus cereus B4264], gi\|218159050\|gb... gi\|229181559, gi... - gi\|229181559\|ref\|ZP_04308885.1\| ATP synthase a chain [Bacillus cereus 172560W], gi\|228601927\|gb\|EEK5... gi\|228630079, gi... - gi\|229153475\|ref\|ZP_04281653.1\| ATP synthase a chain [Bacillus cereus m1550], gi\|228630079\|gb\|EEK867... gi\|29898904, gi\|... - gi\|30023343\|ref\|NP_834974.1\| F0F1 ATP synthase subunit A [Bacillus cereus ATCC 14579], gi\|29898904\|g... gi\|229072778, gi... - gi\|229072778\|ref\|ZP_04205977.1\| ATP synthase a chain [Bacillus cereus F65185], gi\|228710269\|gb\|EEL62... gi\|229050982, gi... - gi\|229050982\|ref\|ZP_04194531.1\| ATP synthase a chain [Bacillus cereus AH676], gi\|228722359\|gb\|EEL737... gi\|228798057, gi... - gi\|228961575\|ref\|ZP_04123184.1\| ATP synthase a chain [Bacillus thuringiensis serovar pakistani str. ... gi\|228955558, gi... - gi\|228955558\|ref\|ZP_04117561.1\| ATP synthase a chain [Bacillus thuringiensis serovar kurstaki str. T... gi\|228635502, gi... - gi\|229147852\|ref\|ZP_04276193.1\| ATP synthase a chain [Bacillus cereus BDRD-ST24], gi\|228635502\|gb\|EE... gi\|228652900, gi... - gi\|229130561\|ref\|ZP_04259517.1\| ATP synthase a chain [Bacillus cereus BDRD-Cer4], gi\|228652900\|gb\|EE... gi\|229112725, gi... - gi\|229112725\|ref\|ZP_04242258.1\| ATP synthase a chain [Bacillus cereus Rock1-15], gi\|228670706\|gb\|EEL... gi\|228700957, gi... - gi\|229082525\|ref\|ZP_04214988.1\| ATP synthase a chain [Bacillus cereus Rock4-2], gi\|228700957\|gb\|EEL5...	3.0E-49	[1..239]	[1..239]
ATPI_MESVI - ATP synthase subunit a, chloroplastic OS=Mesostigma viride GN=atpI PE=3 SV=1	5.0E-49	[5..239]	[25..247]
gi\|42740413, gi\|... - gi\|42784481\|ref\|NP_981728.1\| F0F1 ATP synthase subunit A [Bacillus cereus ATCC 10987], gi\|42740413\|g... gi\|206744913, gi... - gi\|206976947\|ref\|ZP_03237849.1\| ATP synthase F0, A subunit [Bacillus cereus H3081.97], gi\|206744913\|... gi\|217066302, gi... - gi\|217962800\|ref\|YP_002341378.1\| ATP synthase F0, A subunit [Bacillus cereus AH187], gi\|217066302\|gb... gi\|196039466, gi... - gi\|196039466\|ref\|ZP_03106771.1\| ATP synthase F0, A subunit [Bacillus cereus NVH0597-99], gi\|19602962... gi\|196045608, gi... - gi\|196045608\|ref\|ZP_03112838.1\| ATP synthase F0, A subunit [Bacillus cereus 03BB108], gi\|196023439\|g... gi\|218900437, gi... - gi\|218900437\|ref\|YP_002448848.1\| ATP synthase F0, A subunit [Bacillus cereus G9842], gi\|218541561\|gb... gi\|47569806, gi\|... - gi\|47569806\|ref\|ZP_00240477.1\| ATP synthase F0, A subunit [Bacillus cereus G9241], gi\|47553548\|gb\|EA... gi\|222098782, gi... - gi\|222098782\|ref\|YP_002532840.1\| ATP synthase F0, A subunit [Bacillus cereus Q1], gi\|221242841\|gb\|AC... gi\|195991107, gi... - gi\|196036315\|ref\|ZP_03103713.1\| ATP synthase F0, A subunit [Bacillus cereus W], gi\|195991107\|gb\|EDX5... gi\|225789572, gi... - gi\|225867288\|ref\|YP_002752666.1\| ATP synthase F0, A subunit [Bacillus cereus 03BB102], gi\|225789572\|... gi\|228817200, gi... - gi\|228942458\|ref\|ZP_04104995.1\| ATP synthase a chain [Bacillus thuringiensis serovar berliner ATCC 1... gi\|228903785, gi... - gi\|228903785\|ref\|ZP_04067902.1\| ATP synthase a chain [Bacillus thuringiensis IBL 4222], gi\|228855874... gi\|228975390, gi... - gi\|228975390\|ref\|ZP_04135946.1\| ATP synthase a chain [Bacillus thuringiensis serovar thuringiensis s... gi\|228949032, gi... - gi\|228949032\|ref\|ZP_04111304.1\| ATP synthase a chain [Bacillus thuringiensis serovar monterrey BGSC ... gi\|228641342, gi... - gi\|229142053\|ref\|ZP_04270578.1\| ATP synthase a chain [Bacillus cereus BDRD-ST26], gi\|228641342\|gb\|EE... gi\|228982027, gi... - gi\|228982027\|ref\|ZP_04142320.1\| ATP synthase a chain [Bacillus thuringiensis Bt407], gi\|228777691\|gb... gi\|228584011, gi... - gi\|229199435\|ref\|ZP_04326098.1\| ATP synthase a chain [Bacillus cereus m1293], gi\|228584011\|gb\|EEK421... gi\|229193563, gi... - gi\|229193563\|ref\|ZP_04320507.1\| ATP synthase a chain [Bacillus cereus ATCC 10876], gi\|228589868\|gb\|E...	5.0E-49	[1..239]	[1..239]
gi\|52140250, gi\|... - gi\|52140250\|ref\|YP_086580.1\| F0F1 ATP synthase subunit A [Bacillus cereus E33L], gi\|51973719\|gb\|AAU1... gi\|229124815, gi... - gi\|229124815\|ref\|ZP_04253993.1\| ATP synthase a chain [Bacillus cereus 95/8201], gi\|228658606\|gb\|EEL1...	8.0E-49	[1..239]	[1..239]
ATPI_PHYPA - ATP synthase subunit a, chloroplastic OS=Physcomitrella patens subsp. patens GN=atpI PE=3 SV=1 ATPI_PHYPA - ATP synthase subunit a, chloroplastic OS=Physcomitrella patens subsp. patens GN=atpI PE=3 SV=1	8.0E-49	[1..239]	[21..249]
gi\|25290561 - pir\|\|H84119 ATP synthase subunit a atpB [imported] - Bacillus halodurans (strain C-125) gi\|10176384, gi\|... - gi\|15616322\|ref\|NP_244627.1\| F0F1 ATP synthase subunit A [Bacillus halodurans C-125], gi\|10176384\|db...	1.0E-48	[1..239]	[1..237]
ATPI_PSINU - ATP synthase subunit a, chloroplastic OS=Psilotum nudum GN=atpI PE=3 SV=1	1.0E-48	[5..239]	[26..248]
gi\|629605, gi\|515963 - pir\|\|S42658 H+-transporting two-sector ATPase (EC 3.6.3.14) protein 6 precursor - radish mitochondri...	2.0E-48	[4..238]	[176..427]

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Predicted Domain #1

Region A:
Residues: [1-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHGKLVEFL GLTFDLSSVM MVTVAAVIVF LIAVIGTRSL ALRPTGMQNF MEWVFDFVKG  60
   61 IINSTMDWKT GGRFLTLGVT LIMFIIVSNF LGLPFMYSTV EAGEHIAWWR SPTSDPAVTL 120
  121 TLAVMVVTLT HYYGIKMKGT KEYVKGYFQP MKFLFPLKVI EEFANTLTLG LRLFGNIYAG 180
  181 EILLGLLAKL GGATFLGALG ALVPMLAWMG FSVFVGSIQA FIFVMLTMVY MAHKVSHDH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.522879
Match:	1c17M
Description:	F1F0 ATP synthase subunit A
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrogen ion transporting ATP synthase activity, rotational mechanism	14.916062574431	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	13.3765277511271	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	11.6266555949852	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	10.5141571800158	bayes_pls_golite062009
cation transmembrane transporter activity	6.7755175807552	bayes_pls_golite062009
ion transmembrane transporter activity	6.66886754588748	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	6.24164033661356	bayes_pls_golite062009
proton-transporting ATPase activity, rotational mechanism	5.34968915140418	bayes_pls_golite062009
transporter activity	4.44683838532142	bayes_pls_golite062009
substrate-specific transporter activity	4.37473908570954	bayes_pls_golite062009
transmembrane transporter activity	4.36056336888635	bayes_pls_golite062009
cation-transporting ATPase activity	3.33662712450334	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	1.11865103919948	bayes_pls_golite062009
primary active transmembrane transporter activity	0.517601509369888	bayes_pls_golite062009
active transmembrane transporter activity	0.511311810386796	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	0.510137962484563	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	0.476924701765357	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	0.473395661531507	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	0.473285892250811	bayes_pls_golite062009
catalytic activity	0.276917867171685	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.242742762516199	bayes_pls_golite062009
pyrophosphatase activity	0.201337507209354	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.191294406773539	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.188721983770471	bayes_pls_golite062009
ATPase activity, coupled	0.110491424400621	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: