YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260514, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	508 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260514, gi|....

Description	E-value	Query Range	Subject Range
gi\|67849756, gi\|... - gi\|67916294\|ref\|ZP_00510010.1\| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Clostrid...	0.0	[1..508]	[1..509]
gi\|216304 - gi\|216304\|dbj\|BAA01545.1\| NADH dehydrogenase, alpha-2 subunit [Bacillus alcalophilus] gi\|80165 - gi\|80165\|pir\|\|JX0166 NADH oxidase (hydrogen peroxide-forming) (EC 1.6.-.-) - Bacillus sp. (strain YN... DHNA_BACYN - NADH dehydrogenase OS=Bacillus sp. (strain YN-1) GN=ahpF PE=1 SV=1	0.0	[1..508]	[1..509]
gi\|228657486, gi... - gi\|229125828\|ref\|ZP_04254853.1\| NADH dehydrogenase [Bacillus cereus BDRD-Cer4], gi\|228657486\|gb\|EEL1... gi\|228705628, gi... - gi\|229077687\|ref\|ZP_04210317.1\| NADH dehydrogenase [Bacillus cereus Rock4-2], gi\|228705628\|gb\|EEL579... gi\|229068083, gi... - gi\|229068083\|ref\|ZP_04201390.1\| NADH dehydrogenase [Bacillus cereus F65185], gi\|228714897\|gb\|EEL6676... gi\|228950886, gi... - gi\|228950886\|ref\|ZP_04113009.1\| NADH dehydrogenase [Bacillus thuringiensis serovar kurstaki str. T03... gi\|29894125, gi\|... - gi\|30018584\|ref\|NP_830215.1\| Alkyl hydroperoxide reductase subunit F [Bacillus cereus ATCC 14579], g... gi\|229188599, gi... - gi\|229188599\|ref\|ZP_04315638.1\| NADH dehydrogenase [Bacillus cereus ATCC 10876], gi\|228594788\|gb\|EEK... gi\|228606594, gi... - gi\|229176921\|ref\|ZP_04304317.1\| NADH dehydrogenase [Bacillus cereus 172560W], gi\|228606594\|gb\|EEK640... gi\|229148731, gi... - gi\|229148731\|ref\|ZP_04276981.1\| NADH dehydrogenase [Bacillus cereus m1550], gi\|228634739\|gb\|EEK91318... gi\|206968069, gi... - gi\|206968069\|ref\|ZP_03229025.1\| alkyl hydroperoxide reductase, F subunit [Bacillus cereus AH1134], g...	0.0	[1..508]	[1..508]
gi\|47569398, gi\|... - gi\|47569398\|ref\|ZP_00240080.1\| carbamoyl-phosphate synthase, large subunit [Bacillus cereus G9241], ...	0.0	[1..508]	[1..508]
gi\|228588728, gi... - gi\|229194717\|ref\|ZP_04321508.1\| NADH dehydrogenase [Bacillus cereus m1293], gi\|228588728\|gb\|EEK46755... gi\|52144904, gi\|... - gi\|52144904\|ref\|YP_081925.1\| alkyl hydroperoxide reductase subunit F [Bacillus cereus E33L], gi\|5197... gi\|228693845, gi... - gi\|229089459\|ref\|ZP_04220729.1\| NADH dehydrogenase [Bacillus cereus Rock3-42], gi\|228693845\|gb\|EEL47...	0.0	[1..508]	[1..508]
gi\|42779520, gi\|... - gi\|42779520\|ref\|NP_976767.1\| alkyl hydroperoxide reductase, F subunit [Bacillus cereus ATCC 10987], ...	0.0	[1..508]	[1..508]
gi\|216220, gi\|625205 - pir\|\|A49911 NADH oxidase (hydrogen peroxide-forming) (EC 1.6.-.-) - Amphibacillus xylanus, gi\|21622... gi\|216220\|dbj\|BA... - NADH oxidase [Amphibacillus xylanus]	0.0	[2..508]	[1..509]
gi\|75760436, gi\|... - gi\|75760436\|ref\|ZP_00740478.1\| Peroxiredoxin reductase (NAD(P)H) / NADH oxidase H2O2-forming [Bacil... gi\|228905220, gi... - gi\|228905220\|ref\|ZP_04069214.1\| NADH dehydrogenase [Bacillus thuringiensis IBL 4222], gi\|228854420\|g... gi\|218542445, gi... - gi\|218895452\|ref\|YP_002443863.1\| alkyl hydroperoxide reductase, F subunit [Bacillus cereus G9842], g...	0.0	[1..508]	[1..508]
gi\|89204758, gi\|... - gi\|89204758\|ref\|ZP_01183334.1\| FAD-dependent pyridine nucleotide-disulphide oxidoreductase:Glucose-i...	0.0	[1..508]	[1..508]
gi\|152974155, gi... - gi\|89200041\|ref\|ZP_01178797.1\| FAD-dependent pyridine nucleotide-disulphide oxidoreductase:Pyridine ...	0.0	[1..508]	[1..508]

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Predicted Domain #1

Region A:
Residues: [1-508]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILDADIKTQ LSQYLQLMEN DILLKVSAGN DDVSKDMLAL VDELATMSSK ITVEKVELER  60
   61 TPSFSVNRPG EDTGVVFAGI PLGHEFTSLV LALLQVSGRA PKVEQKLIDQ IKNIQGEYHF 120
  121 ESYISLSCHN CPDVVQALNV MSVLNSGITH TMIDGAAFKE EVESKDIMAV PTVFLNGESF 180
  181 GSGRMTLEEI LAKMGNGPDA SELSDKDPYD VLVVGGGPAG ASAAIYAARK GIRTGIVAER 240
  241 FGGQVMDTMG IENFISVKRT EGPKLVASLE EHVKEYDIDV MNLQRAKRLE KKELIEVELE 300
  301 NGAILKSKSV IVSTGARWRN VGVPGEAEFK NKGVAYCPHC DGPLFTGKDV AVIGGGNSGI 360
  361 EAAIDLAGIV KHVTVLEFMP ELKADAVLQE RLNSLPNVTV LKNVQTKEIT GTDKVNGISY 420
  421 IDRETEEVHH VELQGVFVQI GLVPNTDWLG ETVERVRGEI VTDKHGATNV PGVFAAGDCT 480
  481 NNPYKQIIIS MGSGANAALG AFDYLIRN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	91.0
Match:	1hyuA
Description:	Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains; Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
alkyl hydroperoxide reductase activity	4.29610283853788	bayes_pls_golite062009
antioxidant activity	3.66884588063322	bayes_pls_golite062009
oxidoreductase activity, acting on peroxide as acceptor	3.43831566988273	bayes_pls_golite062009
peroxidase activity	3.43831566988273	bayes_pls_golite062009
glutathione peroxidase activity	2.56524997297011	bayes_pls_golite062009
peroxiredoxin activity	2.12777217096121	bayes_pls_golite062009
thioredoxin peroxidase activity	1.96134566495756	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	1.8187537496904	bayes_pls_golite062009
disulfide oxidoreductase activity	1.32811008894503	bayes_pls_golite062009
transcription regulator activity	0.863338015474945	bayes_pls_golite062009
dihydrolipoyl dehydrogenase activity	0.69501605197281	bayes_pls_golite062009
catalytic activity	0.672192331361968	bayes_pls_golite062009
selenium binding	0.619569799903221	bayes_pls_golite062009
binding	0.618139748326926	bayes_pls_golite062009
hydrolase activity	0.517269321619613	bayes_pls_golite062009
protein binding	0.134341907247724	bayes_pls_golite062009
protein disulfide oxidoreductase activity	0.0719543694089202	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: