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View Structure Prediction Details

Protein: gi|30255253, gi|...
Organism: Bacillus anthracis str. Ames
Length: 371 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30255253, gi|....

Description E-value Query
Range
Subject
Range
gi|51977508, gi|... - gi|52144039|ref|YP_082790.1| carbohydrate diacid regulator [Bacillus cereus E33L], gi|51977508|gb|AA...
5.0E-84 [1..371] [1..371]
gi|228944995, gi... - gi|228944995|ref|ZP_04107356.1| Transcriptional regulator [Bacillus thuringiensis serovar monterrey ...
gi|65318664 - gi|65318664|ref|ZP_00391623.1| COG3835: Sugar diacid utilization regulator [Bacillus anthracis str. ...
gi|228932677, gi... - gi|228932677|ref|ZP_04095551.1| Transcriptional regulator [Bacillus thuringiensis serovar andalousie...
gi|229120936, gi... - gi|229120936|ref|ZP_04250178.1| Transcriptional regulator [Bacillus cereus 95/8201], gi|228662596|gb...
9.0E-84 [1..371] [4..374]
gi|42736404, gi|... - gi|42780485|ref|NP_977732.1| transcriptional regulator, putative [Bacillus cereus ATCC 10987], gi|42...
1.0E-82 [1..371] [1..371]
gi|29894993, gi|... - gi|30019449|ref|NP_831080.1| carbohydrate diacid regulator [Bacillus cereus ATCC 14579], gi|29894993...
gi|218233562, gi... - gi|218233562|ref|YP_002366080.1| putative carbohydrate diacid regulator [Bacillus cereus B4264], gi|...
1.0E-82 [1..371] [1..371]
gi|89151094, gi|... - gi|89200933|ref|ZP_01179682.1| Helix-turn-helix, Fis-type [Bacillus cereus subsp. cytotoxis NVH 391-...
1.0E-82 [1..371] [1..371]
gi|47556736, gi|... - gi|47566183|ref|ZP_00237211.1| carbohydrate diacid regulator [Bacillus cereus G9241], gi|47556736|gb...
4.0E-82 [1..371] [1..371]
gi|75760002, gi|... - gi|75760002|ref|ZP_00740069.1| Carbohydrate diacid regulator [Bacillus thuringiensis serovar israele...
7.0E-82 [1..371] [4..374]
gi|89157537, gi|... - gi|89204476|ref|ZP_01183053.1| Helix-turn-helix, Fis-type [Bacillus weihenstephanensis KBAB4], gi|89...
1.0E-79 [1..371] [1..371]
gi|23100285, gi|... - gi|23100285|ref|NP_693752.1| hypothetical protein OB2830 [Oceanobacillus iheyensis HTE831], gi|22778...
3.0E-77 [6..364] [6..366]
gi|28808253 - gi|28808253|dbj|BAC61458.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
gi|28899970, gi|... - gi|28899970|ref|NP_799625.1| hypothetical protein VPA0115 [Vibrio parahaemolyticus RIMD 2210633], gi...
2.0E-72 [1..359] [3..376]

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Predicted Domain #1
Region A:
Residues: [1-136]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFPDLANKI VREVRRLIKE NIIIINIQGV IIASTDIERI GQFHEGALRC AKQKKTVIIT  60
   61 KEDERRLHGV KAGMNLPLLF HDEVIGVIGI TGEPENISQY GEILRKMTEL LIHENYFLEQ 120
  121 LELEHRSYEA FVFDWL

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.13
Match: 2gx5A
Description: No description for 2gx5A was found.

Predicted Domain #2
Region A:
Residues: [137-278]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QNTDWSPSFL DRAKTLGIDL YKKKQLILFS IDQNDTMLQR KIWQHVRNLL TKEHLFVRWG  60
   61 NDRFILFTAM SSKEQTYQFL KRLKQDCETL FSIPLYIGIG QSVTPSNMNL SYEQALQALS 120
  121 VSLATKKIVF NDDLRLEMCL QD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.719 N/A N/A d.110.4 SNARE-like
View Download 0.656 N/A N/A c.23.5 Flavoproteins
View Download 0.606 N/A N/A d.146.1 Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
View Download 0.603 N/A N/A f.7.1 Lipovitellin-phosvitin complex; beta-sheet shell regions
View Download 0.560 N/A N/A d.109.1 Actin depolymerizing proteins

Predicted Domain #3
Region A:
Residues: [279-371]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ISAETREQFL KRTIKNLLSS PELMHTLRLF IDYNQSYKQT AEQLHIHINT LHYRLKKIEE  60
   61 YTGLDPKQFK DLNILYFSLL LLDNHTKKND KID

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.22
Match: 1ntcA
Description: DNA-binding domain of NTRC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transcription regulator activity 3.3433274000438 bayes_pls_golite062009
DNA binding 2.69924718143396 bayes_pls_golite062009
binding 2.59564404935518 bayes_pls_golite062009
nucleic acid binding 2.49248256652331 bayes_pls_golite062009
transcription factor activity 2.13079795809497 bayes_pls_golite062009
sequence-specific DNA binding 0.694747504121538 bayes_pls_golite062009
RNA polymerase II transcription factor activity 0.611882179195983 bayes_pls_golite062009
protein binding 0.440093783038461 bayes_pls_golite062009
transcription repressor activity 0.382260654915774 bayes_pls_golite062009
transcription activator activity 0.249743327112707 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle