YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30263582, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	142 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30263582, gi|....

Description	E-value	Query Range	Subject Range
gi\|38492430, gi\|... - gi\|38492431\|pdb\|1MQ0\|B Chain B, Crystal Structure Of Human Cytidine Deaminase, gi\|38492430\|pdb\|1MQ0\|...	2.0E-45	[5..133]	[10..137]
gi\|108998740 - gi\|108998740\|ref\|XP_001096632.1\| PREDICTED: similar to cytidine deaminase [Macaca mulatta]	3.0E-45	[5..133]	[16..143]
gi\|52786456, gi\|... - gi\|52786456\|ref\|YP_092285.1\| hypothetical protein BLi02721 [Bacillus licheniformis ATCC 14580], gi\|5...	8.0E-44	[3..137]	[2..135]
gi\|41107631, gi\|... - gi\|45387777\|ref\|NP_991242.1\| cytidine deaminase [Danio rerio], gi\|41107631\|gb\|AAH65476.1\| Cytidine d...	2.0E-43	[5..132]	[22..148]
gi\|42783427, gi\|... - gi\|42783427\|ref\|NP_980674.1\| cytidine deaminase [Bacillus cereus ATCC 10987], gi\|42739356\|gb\|AAS4328...	3.0E-43	[1..134]	[1..132]
gi\|167530102, gi... - gi\|167634650\|ref\|ZP_02392970.1\| cytidine deaminase [Bacillus anthracis str. A0442], gi\|167530102\|gb\|... gi\|167513347, gi... - gi\|167638499\|ref\|ZP_02396775.1\| cytidine deaminase [Bacillus anthracis str. A0193], gi\|167513347\|gb\|... gi\|164712188, gi... - gi\|165872057\|ref\|ZP_02216697.1\| cytidine deaminase [Bacillus anthracis str. A0488], gi\|164712188\|gb\|... gi\|118479470, gi... - gi\|118479470\|ref\|YP_896621.1\| cytidine deaminase [Bacillus thuringiensis str. Al Hakam], gi\|11841869... gi\|177653250, gi... - gi\|177653250\|ref\|ZP_02935502.1\| cytidine deaminase [Bacillus anthracis str. A0174], gi\|172081532\|gb\|... gi\|190567033, gi... - gi\|190567033\|ref\|ZP_03019949.1\| cytidine deaminase [Bacillus anthracis Tsiankovskii-I], gi\|190562024... gi\|170687458, gi... - gi\|170687458\|ref\|ZP_02878675.1\| cytidine deaminase [Bacillus anthracis str. A0465], gi\|170668653\|gb\|... gi\|170127637, gi... - gi\|170707393\|ref\|ZP_02897847.1\| cytidine deaminase [Bacillus anthracis str. A0389], gi\|170127637\|gb\|... gi\|196046381, gi... - gi\|196046381\|ref\|ZP_03113607.1\| cytidine deaminase [Bacillus cereus 03BB108], gi\|196022851\|gb\|EDX615... gi\|218905438, gi... - gi\|218905438\|ref\|YP_002453272.1\| cytidine deaminase [Bacillus cereus AH820], gi\|218535246\|gb\|ACK8764... gi\|196034298, gi... - gi\|196034298\|ref\|ZP_03101707.1\| cytidine deaminase [Bacillus cereus W], gi\|195992840\|gb\|EDX56799.1\| ... gi\|196039308, gi... - gi\|196039308\|ref\|ZP_03106614.1\| cytidine deaminase [Bacillus cereus NVH0597-99], gi\|196029935\|gb\|EDX... gi\|227003484, gi... - gi\|227817077\|ref\|YP_002817086.1\| cytidine deaminase [Bacillus anthracis str. CDC 684], gi\|227003484\|... gi\|225866282, gi... - gi\|225866282\|ref\|YP_002751660.1\| cytidine deaminase [Bacillus cereus 03BB102], gi\|225785979\|gb\|ACO26... gi\|228830358, gi... - gi\|228929344\|ref\|ZP_04092369.1\| Cytidine deaminase [Bacillus thuringiensis serovar pondicheriensis B... gi\|228842757, gi... - gi\|228916933\|ref\|ZP_04080495.1\| Cytidine deaminase [Bacillus thuringiensis serovar pulsiensis BGSC 4... gi\|228811704, gi... - gi\|228948014\|ref\|ZP_04110300.1\| Cytidine deaminase [Bacillus thuringiensis serovar monterrey BGSC 4A... gi\|228935621, gi... - gi\|228935621\|ref\|ZP_04098436.1\| Cytidine deaminase [Bacillus thuringiensis serovar andalousiensis BG... gi\|228729413, gi... - gi\|229031949\|ref\|ZP_04187936.1\| Cytidine deaminase [Bacillus cereus AH1271], gi\|228729413\|gb\|EEL8040... gi\|228772283, gi... - gi\|228987551\|ref\|ZP_04147670.1\| Cytidine deaminase [Bacillus thuringiensis serovar tochigiensis BGSC... gi\|229123839, gi... - gi\|229123839\|ref\|ZP_04253033.1\| Cytidine deaminase [Bacillus cereus 95/8201], gi\|228659660\|gb\|EEL153... gi\|229093370, gi... - gi\|229093370\|ref\|ZP_04224477.1\| Cytidine deaminase [Bacillus cereus Rock3-42], gi\|228690026\|gb\|EEL43... gi\|229186540, gi... - gi\|229186540\|ref\|ZP_04313702.1\| Cytidine deaminase [Bacillus cereus BGSC 6E1], gi\|228596971\|gb\|EEK54... gi\|228625574, gi... - gi\|229157915\|ref\|ZP_04285989.1\| Cytidine deaminase [Bacillus cereus ATCC 4342], gi\|228625574\|gb\|EEK8... gi\|49332868, gi\|... - gi\|49481312\|ref\|YP_038356.1\| cytidine deaminase [Bacillus thuringiensis serovar konkukian str. 97-27... gi\|254684058 - gi\|254684058\|ref\|ZP_05147918.1\| cytidine deaminase [Bacillus anthracis str. CNEVA-9066] gi\|51974672, gi\|... - gi\|52141203\|ref\|YP_085627.1\| cytidine deaminase [Bacillus cereus E33L], gi\|51974672\|gb\|AAU16222.1\| c... gi\|229266020, gi... - gi\|229601612\|ref\|YP_002868590.1\| cytidine deaminase [Bacillus anthracis str. A0248], gi\|229266020\|gb... gi\|47529822, gi\|... - gi\|47529822\|ref\|YP_021171.1\| cytidine deaminase [Bacillus anthracis str. 'Ames Ancestor'], gi\|475049... gi\|254736406 - gi\|254736406\|ref\|ZP_05194112.1\| cytidine deaminase [Bacillus anthracis str. Western North America US... gi\|49181123, gi\|... - gi\|49187196\|ref\|YP_030448.1\| cytidine deaminase [Bacillus anthracis str. Sterne], gi\|49181123\|gb\|AAT... gi\|254721892 - gi\|254721892\|ref\|ZP_05183681.1\| cytidine deaminase [Bacillus anthracis str. A1055] gi\|47555542, gi\|... - gi\|47567865\|ref\|ZP_00238573.1\| cytidine deaminase [Bacillus cereus G9241], gi\|47555542\|gb\|EAL13885.1... gi\|254750882 - gi\|254750882\|ref\|ZP_05202921.1\| cytidine deaminase [Bacillus anthracis str. Vollum] gi\|30264371, gi\|... - gi\|30264371\|ref\|NP_846748.1\| cytidine deaminase [Bacillus anthracis str. Ames], gi\|30259029\|gb\|AAP28... gi\|254741444 - gi\|254741444\|ref\|ZP_05199131.1\| cytidine deaminase [Bacillus anthracis str. Kruger B] gi\|254757790 - gi\|254757790\|ref\|ZP_05209817.1\| cytidine deaminase [Bacillus anthracis str. Australia 94]	3.0E-43	[1..134]	[1..132]
gi\|76639480 - gi\|76639480\|ref\|XP_873476.1\| PREDICTED: similar to cytidine deaminase [Bos taurus]	4.0E-43	[5..133]	[63..190]

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Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIEQQLYDV VKQLIEQRYP NDWGGAAAIR VEDGTIYTSV APDVINASTE LCMETGAILE  60
   61 AHKFQKKVTH SICLARENEH SELKVLSPCG VCQERLFYWG PEVQCAITNA KQDIIFKPLK 120
  121 ELQPYHWTEA YHDEMVKEWS TR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.0
Match:	1mq0A
Description:	Crystal Structure of Human Cytidine Deaminase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.07800438828306	bayes_pls_golite062009
hydrolase activity	1.0988277774137	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	0.516651342237498	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	0.385948807040181	bayes_pls_golite062009
deaminase activity	0.20113991436983	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: