YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30265469, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	338 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30265469, gi|....

Description	E-value	Query Range	Subject Range
gi\|221325375 - gi\|221325375\|ref\|ZP_03606669.1\| UDP-glucose 4-epimerase [Bacillus subtilis subsp. subtilis str. SMY] gi\|221321091 - gi\|221321091\|ref\|ZP_03602385.1\| UDP-glucose 4-epimerase [Bacillus subtilis subsp. subtilis str. JH64... gi\|221316179 - gi\|221316179\|ref\|ZP_03597984.1\| UDP-glucose 4-epimerase [Bacillus subtilis subsp. subtilis str. NCIB... GALE_BACSU - UDP-glucose 4-epimerase OS=Bacillus subtilis (strain 168) GN=galE PE=3 SV=1 GALE_BACSU - UDP-glucose 4-epimerase OS=Bacillus subtilis GN=galE PE=3 SV=1	8.0E-96	[1..336]	[1..336]
gi\|37528640, gi\|... - gi\|37528640\|ref\|NP_931985.1\| UDP-glucose 4-epimerase (galactowaldenase) (UDP-galactose 4-epimerase) ...	6.0E-93	[1..336]	[1..337]
gi\|74273840 - gi\|74273840\|gb\|ABA01568.1\| uridine diphosphate n-acetylgalactosamine 4-epimerase [Aeromonas hydrophi...	9.0E-93	[1..337]	[1..337]
gi\|88776892, gi\|... - gi\|88800315\|ref\|ZP_01115881.1\| UDP-glucose 4-epimerase [Reinekea sp. MED297], gi\|88776892\|gb\|EAR0810...	1.0E-92	[1..337]	[1..337]
gi\|76592208, gi\|... - gi\|76792426\|ref\|ZP_00774925.1\| UDP-glucose 4-epimerase [Pseudoalteromonas atlantica T6c], gi\|7659220...	2.0E-92	[2..336]	[3..338]
gi\|78509280, gi\|... - gi\|78691324\|ref\|ZP_00855946.1\| UDP-glucose 4-epimerase [Shewanella sp. MR-7], gi\|78509280\|gb\|EAP2268...	3.0E-92	[1..336]	[1..336]
gi\|75760496, gi\|... - gi\|75760496\|ref\|ZP_00740534.1\| UDP-glucose 4-epimerase / UDP-N-acetylglucosamine 4-epimerase [Bacil...	3.0E-92	[1..338]	[1..338]
gi\|24373232, gi\|... - gi\|24373232\|ref\|NP_717275.1\| UDP-glucose 4-epimerase [Shewanella oneidensis MR-1], gi\|24347461\|gb\|AA... SO1664 - UDP-glucose 4-epimerase	4.0E-92	[1..336]	[1..336]
gi\|29899038, gi\|... - gi\|30023477\|ref\|NP_835108.1\| UDP-glucose 4-epimerase [Bacillus cereus ATCC 14579], gi\|29899038\|gb\|AA... gi\|228652778, gi... - gi\|229130695\|ref\|ZP_04259650.1\| UDP-glucose 4-epimerase [Bacillus cereus BDRD-Cer4], gi\|228652778\|gb...	5.0E-92	[1..335]	[1..335]
gi\|23501944, gi\|... - gi\|23501944\|ref\|NP_698071.1\| UDP-glucose 4-epimerase [Brucella suis 1330], gi\|23347889\|gb\|AAN29986.1... gi\|254704356 - gi\|254704356\|ref\|ZP_05166184.1\| NAD-dependent epimerase/dehydratase [Brucella suis bv. 3 str. 686] gi\|2708270, gi\|8... - gi\|82616011\|emb\|CAJ11044.1\| NAD binding site:NAD-dependent epimerase/dehydratase:UDP-glucose 4-epime... gi\|254697426 - gi\|254697426\|ref\|ZP_05159254.1\| NAD-dependent epimerase/dehydratase [Brucella abortus bv. 2 str. 86/... gi\|254730324 - gi\|254730324\|ref\|ZP_05188902.1\| NAD-dependent epimerase/dehydratase [Brucella abortus bv. 4 str. 292... gi\|161335827, gi... - gi\|161619016\|ref\|YP_001592903.1\| UDP-glucose 4-epimerase [Brucella canis ATCC 23365], gi\|161335827\|g... gi\|82699910 - gi\|82699910\|ref\|YP_414484.1\| NAD binding site:NAD-dependent epimerase/dehydratase:UDP-glucose 4-epim... gi\|62289982, gi\|... - gi\|62289982\|ref\|YP_221775.1\| GalE-1, UDP-glucose 4-epimerase [Brucella abortus bv. 1 str. 9-941], gi... gi\|189024224, gi... - gi\|189024224\|ref\|YP_001934992.1\| NAD-dependent epimerase/dehydratase [Brucella abortus S19], gi\|1890... gi\|237815486, gi... - gi\|237815486\|ref\|ZP_04594484.1\| UDP-glucose 4-epimerase [Brucella abortus str. 2308 A], gi\|237790323... gi\|163843333, gi... - gi\|163843333\|ref\|YP_001627737.1\| UDP-glucose 4-epimerase [Brucella suis ATCC 23445], gi\|163674056\|gb...	5.0E-92	[1..336]	[1..335]

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Predicted Domain #1

Region A:
Residues: [1-338]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAILITGGAG YIGSHTCVEL LNNNYKIIVV DNLSNSSIES LNRVKEITGK QFEFYKENVL  60
   61 NREKMNEIFL ENNIEAVIHF AGFKAVGEST TTPLAYYYNN IISAIVLCDV MQKHNVKNFI 120
  121 FSSSATVYGI PKTLPITEEF PLSVTNPYGQ TKLMIEQIMR DVAKADDEWS IALLRYFNPF 180
  181 GAHQSGRIGE DPNGIPNNLM PYVTQVAVGK LKELNIFGND YPTKDGTGVR DYIHVVDLAK 240
  241 GHVKALEKVL KTKGIEAYNL GTGKGYSVLE MVKAFEKVSG KKIPYKVIGR RPGDVAICFA 300
  301 DVSKAKRELG WEAEYGLEEM CVDSWRWQVN NKNGYQMI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	91.045757
Match:	1lrjA
Description:	Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
UDP-glucose 4-epimerase activity	2.13934644118967	bayes_pls_golite062009
catalytic activity	1.79741889688267	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	1.03956654822048	bayes_pls_golite062009
nucleic acid binding	0.868888700854563	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	0.82673050487418	bayes_pls_golite062009
DNA binding	0.790382977752475	bayes_pls_golite062009
binding	0.784517759335365	bayes_pls_golite062009
transcription regulator activity	0.613310508772122	bayes_pls_golite062009
transcription factor activity	0.11102650759187	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: