YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260134, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	321 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260134, gi|....

Description	E-value	Query Range	Subject Range
gi\|51856588, gi\|... - gi\|51892899\|ref\|YP_075590.1\| bifunctional methionine sulfoxide reductase A/B protein [Symbiobacteriu...	0.0	[5..318]	[4..319]
gi\|89201645, gi\|... - gi\|89201645\|ref\|ZP_01180382.1\| Methionine sulfoxide reductase A:Methionine sulfoxide reductase B [Ba...	0.0	[1..321]	[1..321]
gi\|47568555, gi\|... - gi\|47568555\|ref\|ZP_00239254.1\| peptide methionine sulfoxide reductase VCA0615 [Bacillus cereus G9241...	0.0	[1..321]	[1..321]
gi\|109649313, gi... - gi\|68207020\|ref\|ZP_00559195.1\| Peptide methionine sulfoxide reductase:Protein of unknown function DU...	0.0	[1..317]	[1..318]
gi\|89333708, gi\|... - gi\|89894260\|ref\|YP_517747.1\| hypothetical protein DSY1514 [Desulfitobacterium hafniense Y51], gi\|893...	0.0	[1..317]	[33..350]
gi\|49480455, gi\|... - gi\|49480455\|ref\|YP_039425.1\| bifunctional methionine sulfoxide reductase A/B protein [Bacillus thuri...	0.0	[1..321]	[1..321]
gi\|42740546, gi\|... - gi\|42784614\|ref\|NP_981861.1\| bifunctional methionine sulfoxide reductase A/B protein [Bacillus cereu...	0.0	[1..321]	[1..321]
gi\|52145244, gi\|... - gi\|52145244\|ref\|YP_086701.1\| bifunctional methionine sulfoxide reductase A/B protein [Bacillus cereu...	0.0	[1..321]	[1..321]
gi\|228961700, gi... - gi\|228961700\|ref\|ZP_04123307.1\| Peptide methionine sulfoxide reductase [Bacillus thuringiensis serov... gi\|229051107, gi... - gi\|229051107\|ref\|ZP_04194653.1\| Peptide methionine sulfoxide reductase [Bacillus cereus AH676], gi\|2... gi\|29899027, gi\|... - gi\|30023466\|ref\|NP_835097.1\| bifunctional methionine sulfoxide reductase A/B protein [Bacillus cereu...	0.0	[1..321]	[1..321]
gi\|228855707, gi... - gi\|228903917\|ref\|ZP_04068031.1\| Peptide methionine sulfoxide reductase [Bacillus thuringiensis IBL 4... gi\|74490512, gi\|... - gi\|75761995\|ref\|ZP_00741911.1\| Peptide methionine sulfoxide reductase msrA/msrB [Bacillus thuringien...	0.0	[1..321]	[1..321]

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Predicted Domain #1

Region A:
Residues: [1-176]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVNEKVELA TFAGGCFWCM VSPFEEMVGI IKVVSGYTGG HKENPTYKEV CSETTGHYEA  60
   61 VQITFDANKM PYEELLNIYW RQIDPTDVGG QFHDRGQSYE TVIFYHNEEQ HKKAEASKEE 120
  121 LAKCGRFSKP IATKILPAAT FYPAEEYHQG YHKKNTFRYE LYRKGSGRDA FIKQHW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	69.522879
Match:	2j89A
Description:	No description for 2j89A was found.

Predicted Domain #2

Region A:
Residues: [177-321]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKDNAHLKEK LNDMQFYVTQ ENGTEPPFRN EYWNHKEEGL YVDIVSGEPL FTSIDKFDSG  60
   61 CGWPSFTKPV MSASVKEKMD VSHNMTRTEV RSKEGDSHLG HVFPDGPGPN GLRYCINSAA 120
  121 LRFIPKEELE KEGYGDFLML FGNKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.09691
Match:	1xm0A
Description:	Solution NMR Structure of Methionine Sulfoxide Reductase B Using Minimal Constraint Strategy; Northeast Structural Genomics Target SR10
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein-methionine-R-oxide reductase activity	6.23848614648911	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor	5.90194589149201	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	3.4377744251418	bayes_pls_golite062009
peptide-methionine-(S)-S-oxide reductase activity	1.80676476343543	bayes_pls_golite062009
binding	1.67290562818139	bayes_pls_golite062009
catalytic activity	0.566791077255496	bayes_pls_golite062009
nucleic acid binding	0.555078494441175	bayes_pls_golite062009
ion binding	0.415760364192452	bayes_pls_golite062009
cation binding	0.404651661251597	bayes_pls_golite062009
metal ion binding	0.404651661251597	bayes_pls_golite062009
zinc ion binding	0.32394167601451	bayes_pls_golite062009
DNA binding	0.215568693193579	bayes_pls_golite062009
transcription regulator activity	0.183261590647643	bayes_pls_golite062009
protein binding	0.0755837372617499	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: