YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259980, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	333 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259980, gi|....

Description	E-value	Query Range	Subject Range
gi\|94387119 - gi\|94387119\|ref\|XP_994676.1\| PREDICTED: similar to heat shock protein 8 [Mus musculus]	0.0	[3..332]	[67..451]
gi\|73954621 - gi\|73954621\|ref\|XP_859437.1\| PREDICTED: similar to heat shock protein 8 isoform 3 [Canis familiaris]	0.0	[1..332]	[1..388]
gi\|119587945, gi... - gi\|24234686\|ref\|NP_694881.1\| heat shock 70kDa protein 8 isoform 2 [Homo sapiens], gi\|119587945\|gb\|EA... gi\|73954619 - gi\|73954619\|ref\|XP_859398.1\| PREDICTED: similar to heat shock 70kDa protein 8 isoform 2 isoform 2 [C...	0.0	[1..332]	[1..388]
gi\|45544523 - gi\|45544523\|dbj\|BAD12572.1\| heat shock protein [Numida meleagris] gi\|50759965 - ref\|XP_429266.1\| PREDICTED: hypothetical protein XP_429266 [Gallus gallus] gi\|118722053, gi... - gi\|118722053\|dbj\|BAF38392.1\| heat shock protein 70kDa [Coturnix japonica], gi\|118197131\|dbj\|BAF37041...	0.0	[1..332]	[1..388]
HSP7C_BOVIN, HS7... - Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8) - Bos taurus (Bovine), (P19120) Heat...	0.0	[1..332]	[1..388]

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Predicted Domain #1

Region A:
Residues: [1-333]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFARDIGIDL GTANVLIHVK GKGIVLNEPS VVAIDRNTGK VLAVGEEARS MVGRTPGNIV  60
   61 AIRPLKDGVI ADFEITEAML KYFINKLDVK SFFSKPRILI CCPTNITSVE QKAIREAAER 120
  121 SGGKTVFLEE EPKVAAVGAG MEIFQPSGNM VVDIGGGTTD IAVLSMGDIV TSSSIKMAGD 180
  181 KFDMEILNYI KRKYKLLIGE RTSEDIKIKV GTVFPGARSE ELEIRGRDMV TGLPRTITVC 240
  241 SEEITEALKE NAAVIVQAAK GVLERTPPEL SADIIDRGVI LTGGGALLHG IDMLLAEELK 300
  301 VPVLIAENPM HCVAVGTGIM LENIDKLPRR ALK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.39794
Match:	1jceA
Description:	Prokaryotic actin homolog MreB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.778934303209369	bayes_pls_golite062009
protein binding	0.238186535482463	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: