YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30265176, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	193 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30265176, gi|....

Description	E-value	Query Range	Subject Range
CLPP_THIDA - ATP-dependent Clp protease proteolytic subunit OS=Thiobacillus denitrificans (strain ATCC 25259) GN=...	4.0E-65	[1..193]	[15..207]
CLPP_VIBTL - ATP-dependent Clp protease proteolytic subunit OS=Vibrio tasmaniensis (strain LGP32) GN=clpP PE=3 SV... gi\|84387735, gi\|... - gi\|84387735\|ref\|ZP_00990751.1\| ATP-dependent Clp protease proteolytic subunit [Vibrio splendidus 12B...	1.0E-64	[3..193]	[16..206]
CLPP_AROAE - ATP-dependent Clp protease proteolytic subunit OS=Aromatoleum aromaticum (strain EbN1) GN=clpP PE=3 ...	2.0E-64	[1..193]	[17..209]
gi\|90579278, gi\|... - gi\|90579278\|ref\|ZP_01235088.1\| ATP-dependent Clp protease proteolytic subunit [Vibrio angustum S14],... gi\|89073230, gi\|... - gi\|89073230\|ref\|ZP_01159760.1\| ATP-dependent Clp protease proteolytic subunit [Photobacterium sp. SK...	2.0E-64	[3..193]	[16..206]
gi\|85833328, gi\|... - gi\|86148885\|ref\|ZP_01067136.1\| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. MED222], g...	3.0E-64	[3..193]	[6..196]
gi\|62179060, gi\|... - gi\|62179060\|ref\|YP_215477.1\| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica sub...	4.0E-64	[1..193]	[53..245]
gi\|77974303 - gi\|77974303\|ref\|ZP_00829844.1\| COG0740: Protease subunit of ATP-dependent Clp proteases [Yersinia fr... gi\|238710696, gi... - gi\|238751006\|ref\|ZP_04612502.1\| ATP-dependent Clp protease proteolytic subunit [Yersinia rohdei ATCC...	4.0E-64	[1..193]	[14..206]
CLPP_YERE8 - ATP-dependent Clp protease proteolytic subunit OS=Yersinia enterocolitica serotype O:8 / biotype 1B ... CLPP_YEREN - ATP-dependent Clp protease proteolytic subunit OS=Yersinia enterocolitica GN=clpP PE=3 SV=1	5.0E-64	[1..193]	[14..206]
CLPP_PHOPR - ATP-dependent Clp protease proteolytic subunit OS=Photobacterium profundum GN=clpP PE=3 SV=2 CLPP_PHOPR - ATP-dependent Clp protease proteolytic subunit OS=Photobacterium profundum (strain SS9) GN=clpP PE=3...	5.0E-64	[3..193]	[8..198]
CLPP_PELUB - ATP-dependent Clp protease proteolytic subunit OS=Pelagibacter ubique (strain HTCC1062) GN=clpP PE=3... gi\|91762000, gi\|... - gi\|91762000\|ref\|ZP_01263965.1\| ATP-dependent Clp protease proteolytic subunit [Candidatus Pelagibact... CLPP_PELUB - ATP-dependent Clp protease proteolytic subunit OS=Pelagibacter ubique GN=clpP PE=3 SV=1	6.0E-64	[2..193]	[11..202]

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Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLIPTVIEQ TNRGERAYDI YSRLLKDRII MLGSAIDDNV ANSIVSQLLF LESQDPEKDI  60
   61 HIYINSPGGS ITAGMAIYDT MQFIKPQVST ICIGMAASMG AFLLAAGEKG KRYALPNSEA 120
  121 MIHQPLGGAQ GQATEIEIAA KRILFLREKL NQILADRTGQ PLEVLQRDTD RDNFMTAEKA 180
  181 LEYGLIDKIF TNR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	63.69897
Match:	1tyfA
Description:	Clp protease, ClpP subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.46154163027498	bayes_pls_golite062009
CoA carboxylase activity	0.939626895227199	bayes_pls_golite062009
acetyl-CoA carboxylase activity	0.764444938444292	bayes_pls_golite062009
ligase activity, forming carbon-carbon bonds	0.621229080200493	bayes_pls_golite062009
enoyl-CoA hydratase activity	0.620657548610719	bayes_pls_golite062009
hydrolase activity	0.534319520590169	bayes_pls_golite062009
binding	0.367666848528835	bayes_pls_golite062009
ligase activity	0.32092496884003	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: