YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259804, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	354 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259804, gi|....

Description	E-value	Query Range	Subject Range
gi\|67987421, gi\|... - gi\|69285730\|ref\|ZP_00617069.1\| transport system permease protein [Kineococcus radiotolerans SRS30216...	4.0E-59	[47..352]	[580..881]
gi\|83375265, gi\|... - gi\|83375265\|ref\|ZP_00920028.1\| similar to ABC-type Fe3+-siderophore transport system permease compon...	2.0E-58	[40..353]	[441..745]
gi\|45358745, gi\|... - gi\|45358745\|ref\|NP_988302.1\| transport system permease protein [Methanococcus maripaludis S2], gi\|45...	2.0E-58	[43..353]	[33..348]
gi\|20089997, gi\|... - gi\|20089997\|ref\|NP_616072.1\| iron ABC transporter, permease protein [Methanosarcina acetivorans C2A]...	1.0E-57	[50..353]	[50..345]
gi\|76167036, gi\|... - gi\|76257950\|ref\|ZP_00765607.1\| transport system permease protein [Chloroflexus aurantiacus J-10-fl],...	1.0E-57	[12..353]	[52..389]
gi\|214034358, gi... - gi\|254479701\|ref\|ZP_05092994.1\| ABC transporter, FeCT family, permease protein [Carboxydibrachium pa... gi\|20808280 - gi\|20808280\|ref\|NP_623451.1\| ABC-type cobalamin/Fe3+-siderophores transport systems, permease compon... gi\|20516881, gi\|... - gi\|20808280\|ref\|NP_623451.1\| ABC-type cobalamin/Fe3+-siderophores transport systems, permease compon...	4.0E-57	[23..353]	[18..353]
gi\|114845489, gi... - gi\|167039782\|ref\|YP_001662767.1\| transport system permease protein [Thermoanaerobacter sp. X514], gi... gi\|167037070, gi... - gi\|76796307\|ref\|ZP_00778672.1\| transport system permease protein [Thermoanaerobacter ethanolicus ATC... gi\|241884179, gi... - gi\|241903412\|ref\|ZP_04788136.1\| transport system permease protein [Thermoanaerobacter brockii subsp.... gi\|242230699, gi... - gi\|242257758\|ref\|ZP_04802610.1\| transport system permease protein [Thermoanaerobacter sp. X513], gi\|...	5.0E-57	[24..353]	[19..353]
Y087_METJA - Putative ABC transporter permease protein MJ0087 OS=Methanocaldococcus jannaschii (strain ATCC 43067... Y087_METJA - Putative ABC transporter permease protein MJ0087 OS=Methanocaldococcus jannaschii GN=MJ0087 PE=3 SV=...	2.0E-56	[28..353]	[17..347]
gi\|72395868, gi\|... - gi\|73668706\|ref\|YP_304721.1\| iron ABC transporter, permease protein [Methanosarcina barkeri str. Fus...	7.0E-56	[19..353]	[10..352]
gi\|68185993, gi\|... - gi\|91773082\|ref\|YP_565774.1\| ABC Fe3+-siderophore transporter, inner membrane subunit [Methanococcoi...	9.0E-56	[8..353]	[12..369]

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Predicted Domain #1

Region A:
Residues: [1-354]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITLDYRNKE NVEVDSSLHN ESRSASAFRS KKEARRYWIV LITLIALGLL SSYGLLVYNN  60
   61 PVPIDSPSFI PVVKRRIVAI VAMIIAAVCH SLSTVAFQSI TNNKIITPSL LGFESLYSAI 120
  121 QTSTVFFFGA SALINFNGIG SFLFQVVVMV FMSLILYGWL LSGKYGNLQL MLLVGIIIGT 180
  181 GLNSVSTFMR KLLAPSEFDI LQARLFGSVN HADPAYFPIV IPMIIIVAVL IFAHSKNLNV 240
  241 LSLGKDVATS FGVKYQPSVI YTLVLVAILM SISTALIGPL TFYGFLVATL SYQAAATYDH 300
  301 RYIFPMAFAI GFLIMTSAYF LMYHVFHAQG VVSVIIELFG GIIFLTIVLR KRAL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.69897
Match:	1l7vA
Description:	ABC transporter involved in vitamin B12 uptake, BtuC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
iron ion transmembrane transporter activity	6.00004442358272	bayes_pls_golite062009
transition metal ion transmembrane transporter activity	5.80752187878881	bayes_pls_golite062009
metal ion transmembrane transporter activity	4.60547282723943	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	4.36156645775166	bayes_pls_golite062009
cation transmembrane transporter activity	4.24679228096063	bayes_pls_golite062009
ion transmembrane transporter activity	4.17818028956456	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	3.90378448333717	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	3.89317858583527	bayes_pls_golite062009
transporter activity	3.55756723873586	bayes_pls_golite062009
transmembrane transporter activity	3.28927722269391	bayes_pls_golite062009
substrate-specific transporter activity	2.08242216199915	bayes_pls_golite062009
active transmembrane transporter activity	1.53973123714073	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	1.49204925851479	bayes_pls_golite062009
primary active transmembrane transporter activity	1.48765909281161	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	1.48300584311609	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	1.48300584311609	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	1.48262698557303	bayes_pls_golite062009
ATPase activity, coupled	1.18304891250732	bayes_pls_golite062009
ATPase activity	1.05148866768775	bayes_pls_golite062009
nucleoside-triphosphatase activity	1.00599472731526	bayes_pls_golite062009
pyrophosphatase activity	0.97098682949275	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.96189488115749	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.96118573660055	bayes_pls_golite062009
hydrolase activity	0.299073381659024	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: