YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258862, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	307 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258862, gi|....

Description	E-value	Query Range	Subject Range
gi\|229186388, gi... - gi\|229186388\|ref\|ZP_04313552.1\| Ribonuclease Z [Bacillus cereus BGSC 6E1], gi\|228597015\|gb\|EEK54671.... gi\|228842968, gi... - gi\|228916781\|ref\|ZP_04080346.1\| Ribonuclease Z [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]... gi\|229093204, gi... - gi\|229093204\|ref\|ZP_04224322.1\| Ribonuclease Z [Bacillus cereus Rock3-42], gi\|228690178\|gb\|EEL43972.... RNZ_BACHK - Ribonuclease Z OS=Bacillus thuringiensis subsp. konkukian GN=rnz PE=3 SV=1 RNZ_BACAH - Ribonuclease Z OS=Bacillus thuringiensis (strain Al Hakam) GN=rnz PE=3 SV=1 gi\|196047233, gi... - gi\|196047233\|ref\|ZP_03114449.1\| ribonuclease Z [Bacillus cereus 03BB108], gi\|196021982\|gb\|EDX60673.1... gi\|196038730, gi... - gi\|196038730\|ref\|ZP_03106038.1\| ribonuclease Z [Bacillus cereus NVH0597-99], gi\|196030453\|gb\|EDX6905... RNZ_BACHK - Ribonuclease Z OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=rnz PE=3 SV=1 RNZ_BACC3 - Ribonuclease Z OS=Bacillus cereus (strain 03BB102) GN=rnz PE=3 SV=1	4.0E-65	[1..307]	[1..307]
gi\|228836946, gi... - gi\|228922891\|ref\|ZP_04086189.1\| Ribonuclease Z [Bacillus thuringiensis serovar huazhongensis BGSC 4B... gi\|229129421, gi... - gi\|229129421\|ref\|ZP_04258392.1\| Ribonuclease Z [Bacillus cereus BDRD-Cer4], gi\|228654026\|gb\|EEL09893... gi\|229146717, gi... - gi\|229146717\|ref\|ZP_04275083.1\| Ribonuclease Z [Bacillus cereus BDRD-ST24], gi\|228636737\|gb\|EEK93201... gi\|228799271, gi... - gi\|228960410\|ref\|ZP_04122062.1\| Ribonuclease Z [Bacillus thuringiensis serovar pakistani str. T13001... gi\|229111615, gi... - gi\|229111615\|ref\|ZP_04241166.1\| Ribonuclease Z [Bacillus cereus Rock1-15], gi\|228671997\|gb\|EEL27290.... gi\|229152342, gi... - gi\|229152342\|ref\|ZP_04280535.1\| Ribonuclease Z [Bacillus cereus m1550], gi\|228631304\|gb\|EEK87940.1\| ... RNZ_BACCR - Ribonuclease Z OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 9373 /...	5.0E-65	[1..307]	[1..307]
RNZ_BACCZ - Ribonuclease Z OS=Bacillus cereus (strain ZK / E33L) GN=rnz PE=3 SV=1	6.0E-65	[1..307]	[1..307]
RNZ_BACC1 - Ribonuclease Z OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=rnz PE=3 SV=1 gi\|228642667, gi... - gi\|229140877\|ref\|ZP_04269422.1\| Ribonuclease Z [Bacillus cereus BDRD-ST26], gi\|228642667\|gb\|EEK98953... RNZ_BACCQ - Ribonuclease Z OS=Bacillus cereus (strain Q1) GN=rnz PE=3 SV=1 RNZ_BACC7 - Ribonuclease Z OS=Bacillus cereus (strain AH187) GN=rnz PE=3 SV=1 gi\|206745527, gi... - gi\|206976331\|ref\|ZP_03237239.1\| ribonuclease Z [Bacillus cereus H3081.97], gi\|206745527\|gb\|EDZ56926....	1.0E-64	[1..307]	[1..307]
RNZ_BACWK - Ribonuclease Z OS=Bacillus weihenstephanensis (strain KBAB4) GN=rnz PE=3 SV=1 gi\|229134951, gi... - gi\|229134951\|ref\|ZP_04263757.1\| Ribonuclease Z [Bacillus cereus BDRD-ST196], gi\|228648453\|gb\|EEL0448... gi\|229013352, gi... - gi\|229013352\|ref\|ZP_04170492.1\| Ribonuclease Z [Bacillus mycoides DSM 2048], gi\|228747945\|gb\|EEL9781... gi\|229168886, gi... - gi\|229168886\|ref\|ZP_04296604.1\| Ribonuclease Z [Bacillus cereus AH621], gi\|228614616\|gb\|EEK71723.1\| ...	3.0E-64	[1..307]	[1..307]
gi\|47555193, gi\|... - gi\|47568203\|ref\|ZP_00238907.1\| metallo-beta-lactamase, AtsA/ElaC family [Bacillus cereus G9241], gi\|...	5.0E-64	[1..307]	[1..307]
gi\|7449469 - pir\|\|S74349 hypothetical protein slr0050 - Synechocystis sp. (strain PCC 6803) RNZ_SYNY3 - Ribonuclease Z OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=rnz PE=3 SV=1 RNZ_SYNY3 - Ribonuclease Z OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rnz PE=3 SV=1	6.0E-64	[1..307]	[1..309]
gi\|46130241, gi\|... - gi\|81300820\|ref\|YP_401028.1\| ribonuclease Z [Synechococcus elongatus PCC 7942], gi\|81169701\|gb\|ABB58... gi\|56752093, gi\|... - gi\|56752093\|ref\|YP_172794.1\| ribonuclease Z [Synechococcus elongatus PCC 6301], gi\|56687052\|dbj\|BAD8...	2.0E-63	[1..307]	[1..308]
RNZ_BACLD - Ribonuclease Z OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12200 / NCIMB...	9.0E-63	[1..307]	[1..306]
gi\|221314627 - gi\|221314627\|ref\|ZP_03596432.1\| ribonuclease Z [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi\|221323826 - gi\|221323826\|ref\|ZP_03605120.1\| ribonuclease Z [Bacillus subtilis subsp. subtilis str. SMY] gi\|221319550 - gi\|221319550\|ref\|ZP_03600844.1\| ribonuclease Z [Bacillus subtilis subsp. subtilis str. JH642] RNZ_BACSU - Ribonuclease Z OS=Bacillus subtilis GN=rnz PE=1 SV=1 RNZ_BACSU - Ribonuclease Z OS=Bacillus subtilis (strain 168) GN=rnz PE=1 SV=1	1.0E-61	[1..307]	[1..306]

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Predicted Domain #1

Region A:
Residues: [1-307]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFVFLGTGA GVPSKGRNVS AIALQLLEER GQTWLFDCGE ATQHQILHTS VRPRRIEKIF  60
   61 ITHLHGDHIF GLPGLLGSRS FQGGTTPLTV YGPKGIKQFI EVALSVSTTH VKYPLEIVEI 120
  121 TEEGTVFEDN EFHVETKRLS HGIECFGYRI IEKDIQGALL VDKLLEIGVK PGPLFKRLKD 180
  181 GEVVELENGT ILNGNDFIGP PQKGRVITIL GDTRYCEASR ELAQDADVLV HEATFAAEDE 240
  241 QQAYDYFHST SKQAASIALQ ANAKRLILTH ISSRYQGDTY KELLKEAREL FSNTEIATDL 300
  301 KSFPVDR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	63.221849
Match:	1y44A
Description:	Crystal structure of RNase Z
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.941400907161877	bayes_pls_golite062009
ribonuclease activity	0.821932590977239	bayes_pls_golite062009
hydrolase activity	0.742182118492248	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	0.436897326207341	bayes_pls_golite062009
endoribonuclease activity	0.364180397113473	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: