YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30263404, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	245 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30263404, gi|....

Description	E-value	Query Range	Subject Range
gi\|57547724 - gi\|57547724\|gb\|AAW52555.1\| lysozyme [Brevibacillus laterosporus]	2.0E-73	[1..245]	[1..245]
gi\|254723420 - gi\|254723420\|ref\|ZP_05185208.1\| hypothetical protein BantA1_13214 [Bacillus anthracis str. A1055] gi\|196038433, gi... - gi\|196038433\|ref\|ZP_03105742.1\| putative lysozyme [Bacillus cereus NVH0597-99], gi\|196030841\|gb\|EDX6... gi\|49331497, gi\|... - gi\|49479941\|ref\|YP_037542.1\| hypothetical protein BT9727_3219 [Bacillus thuringiensis serovar konkuk...	5.0E-73	[1..245]	[1..245]
gi\|29897099, gi\|... - gi\|30021544\|ref\|NP_833175.1\| lysozyme M1 precursor [Bacillus cereus ATCC 14579], gi\|29897099\|gb\|AAP1... gi\|229128717, gi... - gi\|229128717\|ref\|ZP_04257695.1\| Lysozyme [Bacillus cereus BDRD-Cer4], gi\|228654910\|gb\|EEL10770.1\| Ly... gi\|229047117, gi... - gi\|229047117\|ref\|ZP_04192735.1\| Lysozyme [Bacillus cereus AH676], gi\|228724218\|gb\|EEL75557.1\| Lysozy...	2.0E-72	[1..245]	[1..245]
gi\|13470422, gi\|... - gi\|14021163\|dbj\|BAB47776.1\| lysozyme [Mesorhizobium loti MAFF303099], gi\|13470422\|ref\|NP_101990.1\| l...	6.0E-69	[5..242]	[68..305]
gi\|110632992, gi... - gi\|110632992\|ref\|YP_673200.1\| glycoside hydrolase family protein [Mesorhizobium sp. BNC1], gi\|110283...	7.0E-69	[11..243]	[98..330]
gi\|23500234, gi\|... - gi\|23500234\|ref\|NP_699674.1\| glycosy hydrolase family protein [Brucella suis 1330], gi\|23463839\|gb\|A...	1.0E-66	[22..241]	[104..323]
gi\|65320734 - gi\|65320734\|ref\|ZP_00393693.1\| COG3757: Lyzozyme M1 (1,4-beta-N-acetylmuramidase) [Bacillus anthraci...	4.0E-66	[17..245]	[1..229]
gi\|25503473 - pir\|\|F95925 probable cell-wall lytic enzyme, similar to muramidase (lysozyme, 3.2.1.17) protein (EC... gi\|15140555, gi\|... - gi\|16264418\|ref\|NP_437210.1\| putative cell-wall lytic enzyme, muramidase (lysozyme) protein [Sinorhi...	5.0E-66	[31..241]	[121..330]
gi\|150031655, gi... - gi\|150377108\|ref\|YP_001313704.1\| glycoside hydrolase family protein [Sinorhizobium medicae WSM419], ...	9.0E-66	[31..243]	[118..329]
gi\|25523565 - pir\|\|AI2604 lysozyme [imported] - Agrobacterium tumefaciens (strain C58, Dupont) gi\|17934149, gi\|... - gi\|17934149\|ref\|NP_530939.1\| lysozyme [Agrobacterium tumefaciens str. C58], gi\|17738561\|gb\|AAL41255....	4.0E-65	[19..241]	[109..331]

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Predicted Domain #1

Region A:
Residues: [1-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKLFIRGI FILVSVMSVV AYLVFQGIFI PNQISADRYE IKGVDVASYQ GDIDWRELEK  60
   61 QNMKFAFIKA TEGSAFVDKY FSKNWTNANK TSMRVGAYHF FSFDSKGETQ AEQFIRNVPK 120
  121 YKQALPPVID VEFYANKKDN PPKREDVTKE LSVMIEMLEK HYGKKVILYA TQEAYDLYIK 180
  181 DAYPQCDIWI RSVLTKPSLS DERKWTFWQY TNRGKLSGYN GKEKYIDLNV FYGNEEEFEN 240
  241 YGMKD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.30103
Match:	1jfxA
Description:	Streptomyces lysozyme
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity, acting on glycosyl bonds	3.1190602686215	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	2.98773241907716	bayes_pls_golite062009
catalytic activity	2.22613067995402	bayes_pls_golite062009
hydrolase activity	1.97740088175981	bayes_pls_golite062009
glucosidase activity	0.58717079348538	bayes_pls_golite062009
hexosaminidase activity	0.16438321606077	bayes_pls_golite062009
amylase activity	0.0914002140078796	bayes_pls_golite062009
alpha-amylase activity	0.0521244165288097	bayes_pls_golite062009
chitinase activity	0.0382131529139698	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: