YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30262948, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	414 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30262948, gi|....

Description	E-value	Query Range	Subject Range
gi\|52785994, gi\|... - gi\|52785994\|ref\|YP_091823.1\| DhaS [Bacillus licheniformis ATCC 14580], gi\|52348496\|gb\|AAU41130.1\| Dh...	0.0	[2..410]	[60..497]
gi\|20372798 - gi\|20372798\|emb\|CAD30313.1\| aldehyde dehydrogenase [Geobacillus stearothermophilus]	0.0	[2..407]	[57..491]
AL1A1_SHEEP - Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 PE=1 SV=2	0.0	[2..411]	[58..498]
gi\|60653829, gi\|... - gi\|60653831\|gb\|AAX29608.1\| aldehyde dehydrogenase 1 family member A1 [synthetic construct], gi\|60653...	0.0	[2..411]	[58..498]
gi\|2183299 - gi\|2183299\|gb\|AAC51652.1\| aldehyde dehydrogenase 1 [Homo sapiens]	0.0	[2..411]	[58..498]
AL1A1_BOVIN - Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 PE=2 SV=3	0.0	[2..411]	[58..498]
gi\|25284183 - pir\|\|C83717 NADP-dependent aldehyde dehydrogenase dhaS [imported] - Bacillus halodurans (strain C-12... gi\|10173152, gi\|... - gi\|15613102\|ref\|NP_241405.1\| NADP-dependent aldehyde dehydrogenase [Bacillus halodurans C-125], gi\|1...	0.0	[2..409]	[61..497]
gi\|197100827 - gi\|197100827\|ref\|NP_001127609.1\| aldehyde dehydrogenase 1A1 [Pongo abelii] gi\|55732507 - gi\|55732507\|emb\|CAH92954.1\| hypothetical protein [Pongo abelii]	0.0	[2..411]	[58..498]
AL1A1_RABIT - Retinal dehydrogenase 1 OS=Oryctolagus cuniculus GN=ALDH1A1 PE=2 SV=1	0.0	[3..411]	[54..493]

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Predicted Domain #1

Region A:
Residues: [1-414]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEVLAKGKK AKEIARELVL KSTEQKNEAL SAIADQLILE TAYILEENKK DIEEGKAKGF  60
   61 SDSLLDRLML NEQRIVDMTE GIKQLIELRD PVGECVSAWE RPNGLSIQEM RVPLGVVGMI 120
  121 YEARPNVTVD AATICLKTGN AVILRGSSSA IHSNKAIVAV IHRALKQTSL PQESVQLIED 180
  181 TTRDSAKQLF TMNDYLDVLI PRGGKQLIDT VVREASVPVL ETGAGNCHVF IDETADKQMA 240
  241 FDIINAKTQR PSVCNAIETI VLHEKWAEQY GSELFSSLKK RGVELRGDQK ALAMDSTIVL 300
  301 ASEEDWGTEF LSLTPAVKLV SSIEEAIHHI NTYGSMHSEA IISENEEKVS KFFVSVDAAA 360
  361 LYHNASTRFT DGSEFGSGAE IGISTQKLHV RGPMGLPALT STKYVIRGNG QIRK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	80.0
Match:	1o20A
Description:	Gamma-glutamyl phosphate reductase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
glutamate-5-semialdehyde dehydrogenase activity	3.27180265380824	bayes_pls_golite062009
catalytic activity	2.80804701752928	bayes_pls_golite062009
1-pyrroline-5-carboxylate dehydrogenase activity	2.65686856100363	bayes_pls_golite062009
oxidoreductase activity	2.31275077585879	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors	2.24875477727877	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	2.22720948878196	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor	1.6559690223037	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH group of donors	1.40606039383065	bayes_pls_golite062009
binding	1.06673666884196	bayes_pls_golite062009
histidinol dehydrogenase activity	0.258030369394064	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: