YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30257210, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	308 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30257210, gi|....

Description	E-value	Query Range	Subject Range
gi\|40795502 - gi\|40795502\|gb\|AAR91477.1\| thermostable alcohol dehydrogenase [Geobacillus sp. M10EXG]	7.0E-64	[3..304]	[1..334]
ADH3_GEOSE - Alcohol dehydrogenase OS=Geobacillus stearothermophilus PE=1 SV=1	3.0E-63	[3..304]	[1..334]
gi\|56419266, gi\|... - gi\|56419266\|ref\|YP_146584.1\| alcohol dehydrogenase [Geobacillus kaustophilus HTA426], gi\|56379108\|db...	3.0E-63	[3..307]	[1..336]
gi\|157278309, gi... - gi\|42412381\|gb\|AAS15570.1\| class III alcohol dehydrogenase [Oryzias latipes], gi\|157278309\|ref\|NP_00...	9.0E-62	[2..307]	[9..376]
gi\|238715026, gi... - gi\|77958654\|ref\|ZP_00822684.1\| COG1062: Zn-dependent alcohol dehydrogenases, class III [Yersinia ber...	1.0E-61	[1..308]	[1..373]
gi\|86134306, gi\|... - gi\|86134306\|ref\|ZP_01052888.1\| zinc-binding dehydrogenase [Polaribacter sp. MED152], gi\|85821169\|gb\|...	2.0E-61	[3..304]	[12..333]
gi\|56961828, gi\|... - gi\|56961828\|ref\|YP_173550.1\| alcohol dehydrogenase [Bacillus clausii KSM-K16], gi\|56908062\|dbj\|BAD62...	5.0E-61	[3..308]	[10..346]
gi\|479932 - gi\|479932\|pir\|\|S35669 alcohol dehydrogenase (EC 1.1.1.1) I - American alligator	5.0E-61	[2..307]	[8..374]

Back

Predicted Domain #1

Region A:
Residues: [1-308]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQNKLVLEG PKCLKWKTCK IKSIQDDEII VKTIAGAISI GAELPQFKGS DVTDMNPIYP  60
   61 RKTGYESYGE VIQVGNKVTN LKVGDRVVSF YGHDTIGIVK GDKVIRVPSY IEPKDALLSI 120
  121 LSCDAAKGIL KLNPRQNEKI LITGMGVIGL LACYFLKYYV GVKHVDVVEP NKNRRDFAKK 180
  181 FCAKNIYESE EQIKEAFHYG FECSATNSGF HTLQKALKTN GQICILSDGN IEELTLTADF 240
  241 YQKELQIIGS SDGYDYQKHA DWFFSQIEQT PWIEEIFQHE IQYTELIQCF EELNQGIITP 300
  301 LKVFVSYK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.69897
Match:	1rjwA
Description:	CRYSTAL STRUCTURE OF NAD(+)-DEPENDENT ALCOHOL DEHYDROGENASE FROM BACILLUS STEAROTHERMOPHILUS STRAIN LLD-R
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity	1.24195452123019	bayes_pls_golite062009
alcohol dehydrogenase (NAD) activity	1.06989088664632	bayes_pls_golite062009
alcohol dehydrogenase activity, zinc-dependent	0.812189592067509	bayes_pls_golite062009
catalytic activity	0.587611311348375	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	0.42312765864527	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	0.41447247201294	bayes_pls_golite062009
binding	0.234974672927409	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: