YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30262149, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	229 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30262149, gi|....

Description	E-value	Query Range	Subject Range
NARX_MYCTU - Nitrate reductase-like protein NarX OS=Mycobacterium tuberculosis GN=narX PE=1 SV=2 NARX_MYCTO - Nitrate reductase-like protein NarX OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=nar... NARX_MYCTU - Nitrate reductase-like protein NarX OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=nar... gi\|148661535, gi... - gi\|167968650\|ref\|ZP_02550927.1\| nitrate reductase narX [Mycobacterium tuberculosis H37Ra], gi\|148661... gi\|215411386 - gi\|215411386\|ref\|ZP_03420194.1\| nitrate reductase narX [Mycobacterium tuberculosis 94_M4241A] gi\|253799222, gi... - gi\|253799222\|ref\|YP_003032223.1\| nitrate reductase narX [Mycobacterium tuberculosis KZN 1435], gi\|25... gi\|215403956 - gi\|215403956\|ref\|ZP_03416137.1\| nitrate reductase narX [Mycobacterium tuberculosis 02_1987] gi\|254550749 - gi\|254550749\|ref\|ZP_05141196.1\| nitrate reductase narX [Mycobacterium tuberculosis '98-R604 INH-RIF-... gi\|254815534 - gi\|254815534\|ref\|ZP_05220535.1\| nitrate reductase narX [Mycobacterium tuberculosis KZN 4207] gi\|76784529, gi\|... - gi\|76784529\|ref\|ZP_00771713.1\| COG5013: Nitrate reductase alpha subunit [Mycobacterium tuberculosis ... gi\|218753446 - gi\|218753446\|ref\|ZP_03532242.1\| nitrate reductase narX [Mycobacterium tuberculosis GM 1503] gi\|255096514 - gi\|255096514\|ref\|ZP_05325992.1\| nitrate reductase narX [Mycobacterium tuberculosis KZN 605]	9.0E-64	[1..223]	[416..640]
gi\|121493291, gi... - gi\|121637644\|ref\|YP_977867.1\| putative nitrate reductase NarX [Mycobacterium bovis BCG str. Pasteur ... gi\|224990119, gi... - gi\|224990119\|ref\|YP_002644806.1\| putative nitrate reductase [Mycobacterium bovis BCG str. Tokyo 172]... gi\|31792924, gi\|... - gi\|31792924\|ref\|NP_855417.1\| nitrate reductase NarX [Mycobacterium bovis AF2122/97], gi\|31618515\|emb... gi\|6651231 - gi\|6651231\|gb\|AAF22229.1\|AF149772_1 fused nitrate reductase [Mycobacterium bovis BCG]	2.0E-63	[1..223]	[416..640]
gi\|62127781, gi\|... - gi\|62180148\|ref\|YP_216565.1\| nitrate reductase 2, gamma subunit [Salmonella enterica subsp. enterica...	4.0E-60	[2..223]	[234..455]
gi\|3560007, gi\|2... - gi\|3560007\|emb\|CAA20629.1\| putative nitrate reductase gamma chain NarI [Streptomyces coelicolor A3(2... gi\|7481080 - pir\|\|T35224 probable nitrate reductase gamma chain - Streptomyces coelicolor	1.0E-58	[2..227]	[1..226]
gi\|51976771, gi\|... - gi\|52143302\|ref\|YP_083527.1\| nitrate reductase, gamma subunit [Bacillus cereus E33L], gi\|51976771\|gb... gi\|221239823, gi... - gi\|222095765\|ref\|YP_002529822.1\| nitrate reductase, gamma subunit [Bacillus cereus Q1], gi\|221239823... gi\|196039700, gi... - gi\|196039700\|ref\|ZP_03107004.1\| respiratory nitrate reductase, gamma subunit [Bacillus cereus NVH059...	2.0E-57	[1..229]	[1..229]
gi\|89206766, gi\|... - gi\|89206766\|ref\|ZP_01185319.1\| Nitrate reductase, gamma subunit [Bacillus weihenstephanensis KBAB4],... gi\|229132985, gi... - gi\|229132985\|ref\|ZP_04261827.1\| Nitrate reductase gamma chain [Bacillus cereus BDRD-ST196], gi\|22865...	3.0E-57	[1..229]	[1..229]
gi\|47556526, gi\|... - gi\|47566897\|ref\|ZP_00237615.1\| respiratory nitrate reductase, gamma subunit [Bacillus cereus G9241],...	4.0E-57	[1..229]	[1..229]
gi\|228725436, gi... - gi\|229043905\|ref\|ZP_04191601.1\| Nitrate reductase gamma chain [Bacillus cereus AH676], gi\|228725436\|... gi\|229144765, gi... - gi\|229144765\|ref\|ZP_04273164.1\| Nitrate reductase gamma chain [Bacillus cereus BDRD-ST24], gi\|228638... gi\|229127565, gi... - gi\|229127565\|ref\|ZP_04256556.1\| Nitrate reductase gamma chain [Bacillus cereus BDRD-Cer4], gi\|228655... gi\|30020256, gi\|... - gi\|30020256\|ref\|NP_831887.1\| respiratory nitrate reductase gamma chain [Bacillus cereus ATCC 14579],...	6.0E-57	[1..229]	[1..229]
gi\|145295325, gi... - gi\|145295325\|ref\|YP_001138146.1\| hypothetical protein cgR_1265 [Corynebacterium glutamicum R], gi\|14... gi\|62390074, gi\|... - gi\|62390074\|ref\|YP_225476.1\| respiratory nitrate reductase 2 gamma chain [Corynebacterium glutamicum...	7.0E-57	[3..223]	[5..228]
gi\|49333104, gi\|... - gi\|49481548\|ref\|YP_036286.1\| nitrate reductase, gamma subunit [Bacillus thuringiensis serovar konkuk...	7.0E-57	[2..229]	[1..228]

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Predicted Domain #1

Region A:
Residues: [1-229]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMDQFLWVLF PYIIFAIFIG GHIFRYNYDQ FGWTSKSSEL LEKKMLRIGS ILFHFGIMFV  60
   61 IGGHVMGILI PEAVYRSIGI SEHMYHVVAI SFGLPAGIAS IIGLIILTYR RVTVKRIIAT 120
  121 STKGDYIALI LLLIVMLAGL SSTFLNIDSK GFDYRTTIGP WFRSLFIFQP KVEYMTEVPV 180
  181 WFKIHILAGL GLFAVWPFTR LVHVFSAPIK YISRSYVIYR RRIPNELKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.154902
Match:	1q16C
Description:	Crystal structure of Nitrate Reductase A, NarGHI, from Escherichia coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nitrate reductase activity	8.42060418947243	bayes_pls_golite062009
oxidoreductase activity, acting on other nitrogenous compounds as donors	7.2464995846242	bayes_pls_golite062009
electron carrier activity	1.14948153252384	bayes_pls_golite062009
catalytic activity	0.434711796157625	bayes_pls_golite062009
oxidoreductase activity	0.34569235854639	bayes_pls_golite062009
binding	0.181448088334902	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: