YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30256671, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	482 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30256671, gi|....

Description	E-value	Query Range	Subject Range
gi\|52143405, gi\|... - gi\|52143405\|ref\|YP_083425.1\| amine oxidase, flavin-containing [Bacillus cereus E33L], gi\|51976874\|gb...	7.0E-76	[1..482]	[1..482]
gi\|29895703, gi\|... - gi\|30020153\|ref\|NP_831784.1\| amine oxidase [flavin-containing] [Bacillus cereus ATCC 14579], gi\|2989...	3.0E-75	[1..482]	[1..482]
gi\|2462090 - gi\|2462090\|emb\|CAA72047.1\| BC542A protein [Bacillus cereus ATCC 10987]	5.0E-75	[1..482]	[1..482]
gi\|65319332 - gi\|65319332\|ref\|ZP_00392291.1\| COG1231: Monoamine oxidase [Bacillus anthracis str. A2012]	5.0E-75	[1..482]	[1..482]
gi\|49477466, gi\|... - gi\|49477466\|ref\|YP_036178.1\| amine oxidase, flavin-containing [Bacillus thuringiensis serovar konkuk...	6.0E-75	[1..482]	[1..482]
gi\|218897021, gi... - gi\|218897021\|ref\|YP_002445432.1\| amine oxidase, flavin-containing [Bacillus cereus G9842], gi\|218544... gi\|74492982, gi\|... - gi\|75759551\|ref\|ZP_00739640.1\| Amine oxidase (flavin-containing) [Bacillus thuringiensis serovar isr...	8.0E-74	[1..482]	[6..487]
gi\|89153783, gi\|... - gi\|89208304\|ref\|ZP_01186818.1\| Amine oxidase [Bacillus weihenstephanensis KBAB4], gi\|89153783\|gb\|EAR...	2.0E-73	[1..482]	[6..487]
gi\|227815255, gi... - gi\|227815255\|ref\|YP_002815264.1\| amine oxidase, flavin-containing [Bacillus anthracis str. CDC 684],... gi\|177650770, gi... - gi\|177650770\|ref\|ZP_02933667.1\| amine oxidase, flavin-containing [Bacillus anthracis str. A0174], gi... gi\|254734823 - gi\|254734823\|ref\|ZP_05192535.1\| amine oxidase, flavin-containing [Bacillus anthracis str. Western No... gi\|49184797, gi\|... - gi\|49184797\|ref\|YP_028049.1\| amine oxidase, flavin-containing [Bacillus anthracis str. Sterne], gi\|4... gi\|170129097, gi... - gi\|170706095\|ref\|ZP_02896557.1\| amine oxidase, flavin-containing [Bacillus anthracis str. A0389], gi... gi\|254721278 - gi\|254721278\|ref\|ZP_05183068.1\| amine oxidase, flavin-containing [Bacillus anthracis str. A1055] gi\|47502368, gi\|... - gi\|47527220\|ref\|YP_018569.1\| amine oxidase, flavin-containing [Bacillus anthracis str. 'Ames Ancesto... gi\|170686347, gi... - gi\|170686347\|ref\|ZP_02877568.1\| amine oxidase, flavin-containing [Bacillus anthracis str. A0465], gi... gi\|254684520 - gi\|254684520\|ref\|ZP_05148380.1\| amine oxidase, flavin-containing [Bacillus anthracis str. CNEVA-9066... gi\|30256582, gi\|... - gi\|30261956\|ref\|NP_844333.1\| amine oxidase, flavin-containing [Bacillus anthracis str. Ames], gi\|302... gi\|167513674, gi... - gi\|167638373\|ref\|ZP_02396650.1\| amine oxidase, flavin-containing [Bacillus anthracis str. A0193], gi... gi\|229266994, gi... - gi\|229602586\|ref\|YP_002866328.1\| amine oxidase, flavin-containing [Bacillus anthracis str. A0248], g... gi\|167531919, gi... - gi\|167633107\|ref\|ZP_02391433.1\| amine oxidase, flavin-containing [Bacillus anthracis str. A0442], gi... gi\|164711072, gi... - gi\|165873198\|ref\|ZP_02217811.1\| amine oxidase, flavin-containing [Bacillus anthracis str. A0488], gi... gi\|254760014 - gi\|254760014\|ref\|ZP_05212038.1\| amine oxidase, flavin-containing [Bacillus anthracis str. Australia ... gi\|254755478 - gi\|254755478\|ref\|ZP_05207512.1\| amine oxidase, flavin-containing [Bacillus anthracis str. Vollum] gi\|254741224 - gi\|254741224\|ref\|ZP_05198912.1\| amine oxidase, flavin-containing [Bacillus anthracis str. Kruger B]	6.0E-71	[1..482]	[2..477]

Back

Predicted Domain #1

Region A:
Residues: [1-482]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYNTEMDETL KIINKGLKKT TSPKQIIVVG AGMAGLVSAS LLKAAGHEVK IFEANNRVGG  60
   61 RIETVRMEDT GLYLDVGAMR IPYSHTLTMA YIRKFGLQVS PFINRNETDI IYVNGRKTTL 120
  121 KQYEKDPSIL KYPVEMNEVG KTSEELLLLA VQPIINFIKK NPEKNWDVVV KDFGRYSTGQ 180
  181 FLKYHPYQYN TYFSPVTIEM IGVLLDLEGF LERSFVETLR FLYIMQEESG FCEIVGGNDR 240
  241 LPKSFLPQLE ENIIYNQKLM KLHQRDNGVT AFYRNEETFE YSSITGDLVI VTIPFSTMRF 300
  301 VEVEPFDSIS HEKWKAIREL HYMPATKIGI QFKSRFWEEQ GQLGGRIITD LPIRYAYYPS 360
  361 YGIGEKGPAM MLGSYTWSYD ALLWDGLSKG DRIYYTLQNL ATILGGQVYD EFLSGISKSW 420
  421 TLDPYALGGF ALFQAGQESE LQPAIVKPEG RIFFAGDHTT LYHGWIQGAI ESGVRVAEEV 480
  481 NE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	65.69897
Match:	1reoA
Description:	L-amino acid oxidase from Agkistrodon halys pallas
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity	2.3417445147889	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor	1.61125987248836	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors	1.47575323060551	bayes_pls_golite062009
amine oxidase activity	1.19337552416822	bayes_pls_golite062009
binding	1.08897727611544	bayes_pls_golite062009
catalytic activity	1.03127962968326	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	0.72139012373661	bayes_pls_golite062009
antioxidant activity	0.6840404582874	bayes_pls_golite062009
dihydrolipoyl dehydrogenase activity	0.681230241795345	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH group of donors	0.442625746935807	bayes_pls_golite062009
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	0.3128047828555	bayes_pls_golite062009
monooxygenase activity	0.30237017182815	bayes_pls_golite062009
protein binding	0.247306689726508	bayes_pls_golite062009
NADPH-adrenodoxin reductase activity	0.130562867406831	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	0.0624733531710968	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: