YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30261767, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	261 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30261767, gi|....

Description	E-value	Query Range	Subject Range
gi\|218896695, gi... - gi\|218896695\|ref\|YP_002445106.1\| transglycosylase, SLT family [Bacillus cereus G9842], gi\|218540969\|... gi\|228859230, gi... - gi\|228900343\|ref\|ZP_04064572.1\| hypothetical protein bthur0014_15490 [Bacillus thuringiensis IBL 422... gi\|74489149, gi\|... - gi\|75763358\|ref\|ZP_00743096.1\| Lytic transglycosylase homolog yjbJ [Bacillus thuringiensis serovar i...	1.0E-64	[1..261]	[1..261]
gi\|228814336, gi... - gi\|228945364\|ref\|ZP_04107719.1\| hypothetical protein bthur0007_15270 [Bacillus thuringiensis serovar... gi\|49480935, gi\|... - gi\|49480935\|ref\|YP_035880.1\| soluble lytic murein transglycosylase [Bacillus thuringiensis serovar k...	1.0E-64	[1..261]	[1..261]
gi\|51977164, gi\|... - gi\|52143695\|ref\|YP_083131.1\| soluble lytic murein transglycosylase [Bacillus cereus E33L], gi\|519771...	2.0E-64	[1..261]	[1..261]
gi\|89153871, gi\|... - gi\|89208183\|ref\|ZP_01186701.1\| Lytic transglycosylase, catalytic [Bacillus weihenstephanensis KBAB4]...	4.0E-64	[1..261]	[1..261]
gi\|47565430, gi\|... - gi\|47565430\|ref\|ZP_00236471.1\| transglycosylase SLT domain protein [Bacillus cereus G9241], gi\|47557...	6.0E-64	[1..261]	[1..261]
gi\|42736774, gi\|... - gi\|42780854\|ref\|NP_978101.1\| Slt family transglycosylase [Bacillus cereus ATCC 10987], gi\|42736774\|g...	5.0E-63	[1..261]	[1..261]
gi\|46019720 - gi\|46019720\|emb\|CAG25465.1\| Tlp protein [Bacillus thuringiensis serovar alesti]	2.0E-61	[1..261]	[1..276]
gi\|30019806, gi\|... - gi\|30019806\|ref\|NP_831437.1\| soluble lytic murein transglycosylase [Bacillus cereus ATCC 14579], gi\|...	8.0E-61	[10..261]	[1..252]
gi\|2634555, gi\|1... - gi\|2634555\|emb\|CAB14053.1\| yomI [Bacillus subtilis subsp. subtilis str. 168], gi\|16079194\|ref\|NP_390... gi\|81342088 - gi\|81342088\|sp\|O31976.1\|YOMI_BACSU RecName: Full=SPBc2 prophage-derived uncharacterized transglycosy... TMP_BPSPB - Probable tape measure protein OS=Bacillus phage SPbeta GN=yomI PE=3 SV=1	1.0E-42	[11..257]	[1287..1540]
gi\|26988854, gi\|... - gi\|26988854\|ref\|NP_744279.1\| soluble lytic transglycosylase, putative [Pseudomonas putida KT2440], g...	3.0E-41	[4..259]	[336..634]

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Predicted Domain #1

Region A:
Residues: [1-261]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVGNIVKEV LAYKKGQIQQ KLSSPQAFVS SRFQEKLQSE PAKETKGTTQ LAKVEDMSQP  60
   61 VQSTKIETVV NKPEQSIHKV EEASKPEEKA ETKNVDEVQV AQKEFERRFP ETKNEAADTW 120
  121 GLTKKYNIQK IRSSNEGKYE DIIDRVSHTY GIPKTLIQKM IEVESDFNPK TVSHAGAKGL 180
  181 MQLMPANVKE MGIKNPFSPA ESIEGGVKEL SGYLKKNNGD LVLALASYNA GPGNVRKYGG 240
  241 VPPFKETQGY IKKILNIDVS K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.0
Match:	1qsaA
Description:	70 KDa soluble lytic transglycosylase (SLT70), superhelical domain; 70 kDa soluble lytic transglycosylase, SLT70
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
penicillin binding	2.64957480679626	bayes_pls_golite062009
catalytic activity	1.95328415115451	bayes_pls_golite062009
lysozyme activity	1.83799209924951	bayes_pls_golite062009
drug binding	1.54697929389118	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	1.16054683174437	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	1.07226857049823	bayes_pls_golite062009
hydrolase activity	0.677491712259	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	0.45061419828567	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: