YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30261745, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	334 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30261745, gi|....

Description	E-value	Query Range	Subject Range
gi\|125972987, gi... - gi\|67875411\|ref\|ZP_00504751.1\| Flagellar motor switch protein FliG [Clostridium thermocellum ATCC 27...	0.0	[3..334]	[9..339]
gi\|77381767, gi\|... - gi\|77457764\|ref\|YP_347269.1\| flagellar motor switch protein G [Pseudomonas fluorescens Pf0-1], gi\|77...	0.0	[2..334]	[8..339]
gi\|70729031, gi\|... - gi\|70729031\|ref\|YP_258765.1\| flagellar motor switch protein G [Pseudomonas fluorescens Pf-5], gi\|683...	0.0	[4..334]	[10..339]
gi\|152987829, gi... - gi\|94415966\|ref\|ZP_01295798.1\| hypothetical protein PaerP_01002295 [Pseudomonas aeruginosa PA7], gi\|...	0.0	[4..334]	[9..338]
gi\|84322094, gi\|... - gi\|84322094\|ref\|ZP_00970439.1\| COG1536: Flagellar motor switch protein [Pseudomonas aeruginosa C3719... gi\|254239471, gi... - gi\|84328574\|ref\|ZP_00976578.1\| COG1536: Flagellar motor switch protein [Pseudomonas aeruginosa 2192]... gi\|218892934, gi... - gi\|218892934\|ref\|YP_002441803.1\| flagellar motor switch protein G [Pseudomonas aeruginosa LESB58], g... FLIG_PSEAE - Flagellar motor switch protein fliG OS=Pseudomonas aeruginosa GN=fliG PE=3 SV=2 gi\|107100553 - gi\|107100553\|ref\|ZP_01364471.1\| hypothetical protein PaerPA_01001578 [Pseudomonas aeruginosa PACS2] gi\|116049031, gi... - gi\|32041107\|ref\|ZP_00138690.1\| COG1536: Flagellar motor switch protein [Pseudomonas aeruginosa UCBPP... FLIG_PSEAE - Flagellar motor switch protein FliG OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 1...	0.0	[4..334]	[9..338]
gi\|28869163, gi\|... - gi\|28869163\|ref\|NP_791782.1\| flagellar motor protein [Pseudomonas syringae pv. tomato str. DC3000], ... gi\|213927861, gi... - gi\|213967560\|ref\|ZP_03395708.1\| flagellar motor switch protein G [Pseudomonas syringae pv. tomato T1... tr\|Q884X7\|Q884X7... - Flagellar motor switch protein FliG OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=fliG PE=3 ... gi\|71555805, gi\|... - gi\|71735252\|ref\|YP_275540.1\| flagellar motor switch protein G [Pseudomonas syringae pv. phaseolicola...	0.0	[1..334]	[1..333]
gi\|95111807 - gi\|95111807\|emb\|CAK16531.1\| flagellar biosynthesis; component of motor switching and energizing FliG... gi\|104782820, gi... - gi\|95111807\|emb\|CAK16531.1\| flagellar biosynthesis; component of motor switching and energizing FliG...	0.0	[1..334]	[7..339]
gi\|241903053, gi... - gi\|241903053\|ref\|ZP_04787782.1\| flagellar motor switch protein FliG [Thermoanaerobacter brockii subs... gi\|166856502, gi... - gi\|76796417\|ref\|ZP_00778779.1\| Flagellar motor switch protein FliG [Thermoanaerobacter ethanolicus A...	0.0	[5..334]	[6..334]
gi\|20516453, gi\|... - gi\|20807888\|ref\|NP_623059.1\| flagellar motor switch protein G [Thermoanaerobacter tengcongensis MB4]... gi\|20807888 - gi\|20807888\|ref\|NP_623059.1\| flagellar motor protein [Thermoanaerobacter tengcongensis MB4]	0.0	[5..334]	[6..334]
gi\|167040329, gi... - gi\|167040329\|ref\|YP_001663314.1\| flagellar motor switch protein G [Thermoanaerobacter sp. X514], gi\|... gi\|242231929, gi... - gi\|242256556\|ref\|ZP_04801445.1\| flagellar motor switch protein FliG [Thermoanaerobacter sp. X513], g...	0.0	[5..334]	[6..334]

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Predicted Domain #1

Region A:
Residues: [1-86]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDEISSKEK AAILIRTLEE GVAAKVIEYM TAKEKEVLLR EIAKFRVYKS ETLENVLGEF  60
   61 LYELNVKELN LVTPDKEYIR RIFKNM

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.39
Match:	1lkvX
Description:	FliG
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [87-334]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEDELEKLLE DLWYNKDNPF EFLNSLTDLE PLLTVLNDES PQTIAIIASY IKPQLASQLI  60
   61 ERLPDHKRVE TVMGIAKLEQ VDGELINQIG DLLKSKLNNM AFNAINKTDG LKTIVNILNN 120
  121 VSRGVEKTVF QKLDEMDYEL SEKIKENMFV FEDLLGLEDL ALRRVLEEIT DNGVIAKALK 180
  181 IAKEEIKEKL FTCMSSNRKE MILEELDGLG PLKMTDAEKA QQTITDTVKK LEKEGRIIVQ 240
  241 RGEDDVLI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	77.0
Match:	1lkvX
Description:	FliG
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
motor activity	2.67404852673323	bayes_pls_golite062009
binding	0.827983811500883	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.809819809521648	bayes_pls_golite062009
pyrophosphatase activity	0.766845130042953	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.747495412028734	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.746509234796674	bayes_pls_golite062009
protein binding	0.331391148906732	bayes_pls_golite062009
hydrolase activity	0.00297875768409188	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: