YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30255968, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	122 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30255968, gi|....

Description	E-value	Query Range	Subject Range
gi\|46448689, gi\|... - gi\|46579275\|ref\|YP_010083.1\| bifunctional flagellar protein FliS/hypothetical protein [Desulfovibrio...	6.0E-39	[2..120]	[3..121]
gi\|120603163, gi... - gi\|120603163\|ref\|YP_967563.1\| flagellar protein FliS [Desulfovibrio vulgaris subsp. vulgaris DP4], g...	6.0E-39	[2..120]	[3..121]
gi\|77961125 - gi\|77961125\|ref\|ZP_00824971.1\| COG1516: Flagellin-specific chaperone FliS [Yersinia mollaretii ATCC ...	6.0E-36	[2..122]	[8..130]
gi\|77975698 - gi\|77975698\|ref\|ZP_00831232.1\| COG1516: Flagellin-specific chaperone FliS [Yersinia frederiksenii AT...	8.0E-36	[1..122]	[7..130]
gi\|77957934 - gi\|77957934\|ref\|ZP_00821977.1\| COG1516: Flagellin-specific chaperone FliS [Yersinia bercovieri ATCC ...	1.0E-35	[2..122]	[8..130]
gi\|77979910 - gi\|77979910\|ref\|ZP_00835326.1\| COG1516: Flagellin-specific chaperone FliS [Yersinia intermedia ATCC ...	2.0E-35	[1..122]	[7..130]
Q66BQ9\|Q66BQ9_YERPS - Flagellar protein FliS - Yersinia pseudotuberculosis gi\|152959429, gi... - gi\|77628909\|ref\|ZP_00791495.1\| COG1516: Flagellin-specific chaperone FliS [Yersinia pseudotuberculos... gi\|169751142, gi... - gi\|170024608\|ref\|YP_001721113.1\| flagellar protein FliS [Yersinia pseudotuberculosis YPIII], gi\|1697... gi\|186698178, gi... - gi\|186895152\|ref\|YP_001872264.1\| flagellar protein FliS [Yersinia pseudotuberculosis PB1/+], gi\|1866... gi\|51596047, gi\|... - gi\|51596047\|ref\|YP_070238.1\| flagellar protein FliS [Yersinia pseudotuberculosis IP 32953], gi\|51589...	3.0E-35	[2..122]	[8..130]
FLIS_VIBCH - Flagellar protein fliS OS=Vibrio cholerae GN=fliS PE=3 SV=1 gi\|124122827, gi... - gi\|153801650\|ref\|ZP_01956236.1\| flagellar protein FliS [Vibrio cholerae MZO-3], gi\|124122827\|gb\|EAY4... gi\|126510463, gi... - gi\|153818968\|ref\|ZP_01971635.1\| flagellar protein FliS [Vibrio cholerae NCTC 8457], gi\|126510463\|gb\|... gi\|126519868, gi... - gi\|229511986\|ref\|ZP_04401465.1\| flagellar biosynthesis protein FliS [Vibrio cholerae B33], gi\|229351... gi\|227010151, gi... - gi\|227082263\|ref\|YP_002810814.1\| flagellar protein FliS [Vibrio cholerae M66-2], gi\|227010151\|gb\|ACP... gi\|254844929, gi... - gi\|75830327\|ref\|ZP_00759607.1\| COG1516: Flagellin-specific chaperone FliS [Vibrio cholerae MO10], gi... gi\|229355282, gi... - gi\|229507777\|ref\|ZP_04397282.1\| flagellar biosynthesis protein FliS [Vibrio cholerae BX 330286], gi\|... gi\|229513789, gi... - gi\|229513789\|ref\|ZP_04403251.1\| flagellar biosynthesis protein FliS [Vibrio cholerae TMA 21], gi\|229... gi\|116218029, gi... - gi\|75824658\|ref\|ZP_00754106.1\| COG1516: Flagellin-specific chaperone FliS [Vibrio cholerae RC385], g... gi\|229519122, gi... - gi\|229519122\|ref\|ZP_04408565.1\| flagellar biosynthesis protein FliS [Vibrio cholerae RC9], gi\|229343... gi\|75827441, gi\|... - gi\|75827441\|ref\|ZP_00756876.1\| COG1516: Flagellin-specific chaperone FliS [Vibrio cholerae O395], gi... gi\|229341016, gi... - gi\|229522091\|ref\|ZP_04411508.1\| flagellar biosynthesis protein FliS [Vibrio cholerae TM 11079-80], g... gi\|75816881, gi\|... - gi\|75816881\|ref\|ZP_00747339.1\| COG1516: Flagellin-specific chaperone FliS [Vibrio cholerae V52], gi\|... gi\|229528850, gi... - gi\|229528850\|ref\|ZP_04418240.1\| flagellar biosynthesis protein FliS [Vibrio cholerae 12129(1)], gi\|2... gi\|75818879, gi\|... - gi\|75818879\|ref\|ZP_00748994.1\| COG1516: Flagellin-specific chaperone FliS [Vibrio cholerae V51], gi\|... gi\|229369977, gi... - gi\|229607322\|ref\|YP_002877970.1\| flagellar biosynthesis protein FliS [Vibrio cholerae MJ-1236], gi\|2... gi\|197751280, gi... - gi\|254291375\|ref\|ZP_04962168.1\| flagellar protein FliS [Vibrio cholerae AM-19226], gi\|197751280\|ref\|... FLIS_VIBCH - Flagellar protein FliS OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=f... gi\|121549006, gi... - gi\|121586839\|ref\|ZP_01676621.1\| flagellar protein FliS [Vibrio cholerae 2740-80], gi\|121549006\|gb\|EA... gi\|153828630, gi... - gi\|153828630\|ref\|ZP_01981297.1\| flagellar protein FliS [Vibrio cholerae 623-39], gi\|148875901\|gb\|EDL... gi\|124116083, gi... - gi\|153213283\|ref\|ZP_01948695.1\| flagellar protein FliS [Vibrio cholerae 1587], gi\|124116083\|gb\|EAY34... gi\|149740760, gi... - gi\|153825609\|ref\|ZP_01978276.1\| flagellar protein FliS [Vibrio cholerae MZO-2], gi\|149740760\|gb\|EDM5... gi\|153223612, gi... - gi\|153223612\|ref\|ZP_01953966.1\| flagellar protein FliS [Vibrio cholerae MAK 757], gi\|124118078\|gb\|EA...	5.0E-35	[1..121]	[5..126]
gi\|167468931 - gi\|167468931\|ref\|ZP_02333635.1\| flagellar protein FliS [Yersinia pestis FV-1] gi\|229701209, gi... - gi\|229896286\|ref\|ZP_04511456.1\| flagellar protein FliS [Yersinia pestis Pestoides A], gi\|229701209\|g... gi\|229897222, gi... - gi\|229897222\|ref\|ZP_04512378.1\| flagellar protein FliS [Yersinia pestis biovar Orientalis str. PEXU2... gi\|229688990, gi... - gi\|229897949\|ref\|ZP_04513100.1\| flagellar protein FliS [Yersinia pestis biovar Orientalis str. India... gi\|165926023, gi... - gi\|165926023\|ref\|ZP_02221855.1\| flagellar protein FliS [Yersinia pestis biovar Orientalis str. F1991... gi\|165990216, gi... - gi\|166010872\|ref\|ZP_02231770.1\| flagellar protein FliS [Yersinia pestis biovar Antiqua str. E1979001... gi\|89105436, gi\|... - gi\|89105436\|ref\|ZP_01177955.1\| COG1516: Flagellin-specific chaperone FliS [Yersinia pestis biovar Or... gi\|166207856, gi... - gi\|166210676\|ref\|ZP_02236711.1\| flagellar protein FliS [Yersinia pestis biovar Antiqua str. B4200300... gi\|108807212, gi... - gi\|108807212\|ref\|YP_651128.1\| flagellar protein FliS [Yersinia pestis Antiqua], gi\|108779125\|gb\|ABG1... gi\|167049566, gi... - gi\|167401177\|ref\|ZP_02306680.1\| flagellar protein FliS [Yersinia pestis biovar Antiqua str. UG05-045... gi\|77635987, gi\|... - gi\|77635987\|ref\|ZP_00798065.1\| COG1516: Flagellin-specific chaperone FliS [Yersinia pestis Angola], ... gi\|108776092, gi... - gi\|229902820\|ref\|ZP_04517937.1\| flagellar protein FliS [Yersinia pestis Nepal516], gi\|229680267\|gb\|E... gi\|166961642, gi... - gi\|167419947\|ref\|ZP_02311700.1\| flagellar protein FliS [Yersinia pestis biovar Orientalis str. MG05-... gi\|167055182, gi... - gi\|167425783\|ref\|ZP_02317536.1\| flagellar protein FliS [Yersinia pestis biovar Mediaevalis str. K197... gi\|149366214, gi... - gi\|149366214\|ref\|ZP_01888249.1\| flagellar protein FliS [Yersinia pestis CA88-4125], gi\|149292627\|gb\|... gi\|145210270, gi... - gi\|145598574\|ref\|YP_001162650.1\| flagellar protein FliS [Yersinia pestis Pestoides F], gi\|145210270\|... gi\|22126350, gi\|... - gi\|22126350\|ref\|NP_669773.1\| flagellar protein FliS [Yersinia pestis KIM], gi\|21959333\|gb\|AAM86024.1... gi\|25303003 - pir\|\|AE0224 flagellar protein FliS [imported] - Yersinia pestis (strain CO92) gi\|218928959, gi... - gi\|218928959\|ref\|YP_002346834.1\| flagellar protein FliS [Yersinia pestis CO92], gi\|16122091\|ref\|NP_4... gi\|45436232, gi\|... - gi\|45441372\|ref\|NP_992911.1\| flagellar protein FliS [Yersinia pestis biovar Microtus str. 91001], gi...	5.0E-35	[2..122]	[8..130]
gi\|83572532, gi\|... - gi\|83589618\|ref\|YP_429627.1\| flagellar protein FliS [Moorella thermoacetica ATCC 39073], gi\|83572532...	6.0E-35	[1..122]	[4..124]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQAWQRYMQN DIMTSNPIKN TIFIYERCIV EFRNLEELLH AFKLQEGDAL LEKLERIFEE  60
   61 LKLQLNPEIT KDLYDSLYGL YDWICIQIQT MKVTREAKDI DAIVKVLQDL IDGYRGALEN 120
  121 EQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.221849
Match:	1vh6A
Description:	Crystal structure of a flagellar protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.31438572337508	bayes_pls_golite062009
protein binding	0.977368420595996	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: