YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30255420, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	374 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30255420, gi|....

Description	E-value	Query Range	Subject Range
gi\|116052037, gi... - gi\|116052037\|ref\|YP_789120.1\| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa UCBPP-PA14], gi\|1... gi\|126196061, gi... - gi\|254242683\|ref\|ZP_04936005.1\| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa 2192], gi\|19455... gi\|194547876, gi... - gi\|254236891\|ref\|ZP_04930214.1\| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa C3719], gi\|1945... gi\|11348401, gi\|... - gi\|4887207\|gb\|AAD32234.1\|AF147448_5 penicillin-binding protein 5 [Pseudomonas aeruginosa], pir\|\|C831... gi\|9950191, gi\|1... - gi\|9950191\|gb\|AAG07386.1\|AE004817_10 D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa PAO1], gi\|... gi\|218769943, gi... - gi\|218889720\|ref\|YP_002438584.1\| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa LESB58], gi\|21...	7.0E-93	[3..368]	[8..385]
gi\|148549880, gi... - gi\|82738224\|ref\|ZP_00901061.1\| D-alanyl-D-alanine carboxypeptidase [Pseudomonas putida F1], gi\|82714...	1.0E-92	[2..368]	[25..402]
gi\|24986562, gi\|... - gi\|26991483\|ref\|NP_746908.1\| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas putida KT2440], g...	5.0E-92	[2..368]	[8..385]
gi\|104783763, gi... - gi\|95112750\|emb\|CAK17478.1\| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 (precursor) [... gi\|95112750 - gi\|95112750\|emb\|CAK17478.1\| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 (precursor) [...	1.0E-90	[2..368]	[8..385]
gi\|84319218 - gi\|84319218\|ref\|ZP_00967619.1\| COG1686: D-alanyl-D-alanine carboxypeptidase [Pseudomonas aeruginosa ... gi\|46164608 - gi\|46164608\|ref\|ZP_00137438.2\| COG1686: D-alanyl-D-alanine carboxypeptidase [Pseudomonas aeruginosa ... gi\|84325131 - gi\|84325131\|ref\|ZP_00973171.1\| COG1686: D-alanyl-D-alanine carboxypeptidase [Pseudomonas aeruginosa ... gi\|107103514 - gi\|107103514\|ref\|ZP_01367432.1\| hypothetical protein PaerPA_01004584 [Pseudomonas aeruginosa PACS2]	4.0E-90	[25..368]	[3..358]
gi\|94417068 - gi\|94417068\|ref\|ZP_01296890.1\| hypothetical protein PaerP_01001264 [Pseudomonas aeruginosa PA7]	4.0E-90	[25..368]	[3..358]
gi\|71557111, gi\|... - gi\|71736558\|ref\|YP_276518.1\| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. phaseolic...	6.0E-90	[3..368]	[17..394]
tr\|Q87VW4\|Q87VW4... - D-alanyl-D-alanine carboxypeptidase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_4821... gi\|28871936, gi\|... - gi\|28871936\|ref\|NP_794555.1\| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. tomato st... gi\|213927387, gi... - gi\|213968044\|ref\|ZP_03396190.1\| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. tomato...	9.0E-90	[2..368]	[8..385]
gi\|66047588, gi\|... - gi\|66047588\|ref\|YP_237429.1\| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas syringae pv. syri...	1.0E-89	[3..368]	[17..394]
gi\|68347052, gi\|... - gi\|70732753\|ref\|YP_262516.1\| D-alanyl-D-alanine carboxypeptidase [Pseudomonas fluorescens Pf-5], gi\|...	5.0E-89	[2..368]	[8..384]

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Predicted Domain #1

Region A:
Residues: [1-374]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRICVIITL LIIYASVMPI PTYAKMNSNV SARNAVLMEQ HSGRVLYGKA EHEPQKIASI  60
   61 TKIMTALLAA ESGKMKERVL VSNEAVRVEG SAIYLKPGQK VKLEDLVYGL MLRSGNDAAQ 120
  121 VIAENVGGSI EGFVYLMNEK AKQIRMKDTH FSNPHGLDGD GSHYSSAYDM ALLTRYAMGN 180
  181 ETFKEIFGTK TYKSDSWDYP WKNKHKLVTS YYEFATGGKT GFTKKAGRTL VTTASKDGLD 240
  241 LIVVTLSASS DWDDHMNLFD KGFDRFEQTK VLGQGALAEI TEKKYANHVY TKNSFSVPLT 300
  301 EEEKKSVVLK VELDKSAKLV DGVKVGKTDV YVGNEKVGER NLFYSKRKLV ATTGMYWNNV 360
  361 KEIFSYMIGV GSDG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.522879
Match:	1nzoA
Description:	The crystal structure of wild type penicillin-binding protein 5 from E. coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
serine-type D-Ala-D-Ala carboxypeptidase activity	3.37745387761459	bayes_pls_golite062009
penicillin binding	3.16077730467133	bayes_pls_golite062009
serine-type carboxypeptidase activity	3.02516915958448	bayes_pls_golite062009
serine-type exopeptidase activity	2.98959517344587	bayes_pls_golite062009
carboxypeptidase activity	2.34154596924818	bayes_pls_golite062009
catalytic activity	2.2253600206851	bayes_pls_golite062009
drug binding	2.00354593744547	bayes_pls_golite062009
exopeptidase activity	1.66768404710194	bayes_pls_golite062009
peptidase activity	0.0621279448114327	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: