YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39985493, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	185 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39985493, gi|....

Description	E-value	Query Range	Subject Range
gi\|25286221, gi\|... - pir\|\|AF2879 formyltetrahydrofolate deformylase [imported] - Agrobacterium tumefaciens (strain C58, D... gi\|17740955, gi\|... - gi\|17936346\|ref\|NP_533136.1\| formyltetrahydrofolate deformylase [Agrobacterium tumefaciens str. C58]...	167.0	[0..6]	[180..1]
gi\|15073026 - gi\|15073026\|emb\|CAC41485.1\| Probable formyltetrahydrofolate deformylase [Sinorhizobium meliloti 1021... gi\|195970220, gi... - gi\|195970220\|ref\|NP_384204.3\| formyltetrahydrofolate deformylase [Sinorhizobium meliloti 1021], gi\|1...	164.0	[0..5]	[180..2]
gi\|86279986, gi\|... - gi\|86355884\|ref\|YP_467776.1\| formyltetrahydrofolate deformylase [Rhizobium etli CFN 42], gi\|86279986...	163.0	[0..6]	[180..1]
gi\|36958692 - gi\|36958692\|gb\|AAQ87160.1\| Formyltetrahydrofolate deformylase [Rhizobium sp. NGR234]	163.0	[0..5]	[180..1]
gi\|113872227, gi... - gi\|150398028\|ref\|YP_001328495.1\| formyltetrahydrofolate deformylase [Sinorhizobium medicae WSM419], ...	163.0	[0..6]	[180..1]
gi\|115254648, gi... - gi\|116250000\|ref\|YP_765838.1\| formyltetrahydrofolate deformylase [Rhizobium leguminosarum bv. viciae...	161.0	[0..6]	[180..1]
gi\|84665419, gi\|... - gi\|84686506\|ref\|ZP_01014399.1\| formyltetrahydrofolate deformylase [Rhodobacterales bacterium HTCC265...	161.0	[0..6]	[180..1]

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Predicted Domain #1

Region A:
Residues: [1-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKDSVVHFA LSVVGKDRPG IVAGTTGILY RLGCNIEDSS STMLGGEFAM ILIISHPKPF  60
   61 TKSRLLEEFR VLGEDMGLTV SARTMTPDEA EYRAPEGEIC MLSVYGSDKP GIVYRVTKEL 120
  121 AERSINITDL NTKLVGKKGE PVYVMMIEAA LPEGISVDQV SAMLEEIRKE LNVEISVRSI 180
  181 TPVSL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.69897
Match:	1u8sA
Description:	Crystal structure of putative glycine cleavage system transcriptional repressor
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
acetolactate synthase activity	1.96622550912719	bayes_pls_golite062009
transcription regulator activity	1.90611980547498	bayes_pls_golite062009
nucleic acid binding	1.30810277305542	bayes_pls_golite062009
binding	1.08639129921894	bayes_pls_golite062009
DNA binding	1.0778174555804	bayes_pls_golite062009
catalytic activity	0.645256181736122	bayes_pls_golite062009
transcription factor activity	0.451834422307449	bayes_pls_golite062009
transferase activity, transferring aldehyde or ketonic groups	0.422695169935928	bayes_pls_golite062009
protein binding	0.319036476490264	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: