YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39985228, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39985228, gi|....

Description	E-value	Query Range	Subject Range
gi\|46371976 - gi\|46371976\|gb\|AAS90623.1\| putative low molecular weight heat shock protein [uncultured soil bacteri...	135.0	[0..1]	[146..1]
gi\|8671873 - gi\|8671873\|gb\|AAF78436.1\|AC018748_15 Contains similarity to 17.6 KD class I heat shock protein from ...	133.0	[0..2]	[145..266]
gi\|41059801 - gi\|41059801\|gb\|AAR99375.1\| small heat shock protein [Prunus persica]	130.0	[0..2]	[145..18]
gi\|17135264, gi\|... - gi\|17227782\|ref\|NP_484330.1\| small heat shock protein [Nostoc sp. PCC 7120], gi\|17135264\|dbj\|BAB7781... gi\|25295710 - pir\|\|AF1842 small heat shock protein [imported] - Nostoc sp. (strain PCC 7120)	130.0	[0..1]	[146..1]
HSP16_SOYBN - 18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1	130.0	[0..2]	[145..20]
gi\|77954323, gi\|... - gi\|77954323\|ref\|ZP_00818719.1\| similar to low molecular weight heat shock protein (Hsp17) [Marinobac...	129.0	[0..1]	[145..1]
gi\|75909284, gi\|... - gi\|75909284\|ref\|YP_323580.1\| heat shock protein Hsp20 [Anabaena variabilis ATCC 29413], gi\|75703009\|...	129.0	[0..1]	[146..24]
gi\|67922618, gi\|... - gi\|67922618\|ref\|ZP_00516124.1\| Heat shock protein Hsp20 [Crocosphaera watsonii WH 8501], gi\|67855546...	129.0	[0..1]	[142..1]
gi\|7441305, gi\|1... - pir\|\|T07417 heat shock protein 20, chromoplast-associated - tomato, gi\|1885358\|gb\|AAB49626.1\| chromo...	128.0	[0..3]	[145..93]

Back

Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASPKDPLD WAALLQLQMD EAFDFILRSE AGSVAECDLS PPVDIFETPD AFSVEFDLPG  60
   61 TDPADLSLKL CCNMLILEGV KRDDSREGGS YLCLERRFGR FCRTVEIPPT VDVSAVRADY 120
  121 RRGVLTVTFP RLSDRRKVMR DIPIIQGDN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.522879
Match:	1gmeA
Description:	Small heat shock protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.20758866613061	bayes_pls_golite062009
catalytic activity	0.63074808892513	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: