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View Structure Prediction Details

Protein: gi|39998136, gi|...
Organism: Geobacter sulfurreducens PCA
Length: 95 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39998136, gi|....

Description E-value Query
Range
Subject
Range
gi|78221657, gi|... - gi|78221657|ref|YP_383404.1| anti-sigma-28 factor, FlgM [Geobacter metallireducens GS-15], gi|781929...
126.0 [0..5] [92..5]
gi|222053737, gi... - gi|222053737|ref|YP_002536099.1| Anti-sigma-28 factor FlgM family protein [Geobacter sp. FRC-32], gi...
49.0 [0..26] [91..17]
gi|94264034, gi|... - gi|94266380|ref|ZP_01290079.1| Anti-sigma-28 factor, FlgM [delta proteobacterium MLMS-1], gi|9426403...
47.0 [0..22] [93..19]
gi|89083864, gi|... - gi|89092129|ref|ZP_01165084.1| negative regulator of flagellin synthesis FlgM, putative [Oceanospiri...
45.0 [0..5] [91..3]

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Predicted Domain #1
Region A:
Residues: [1-95]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIDNDIVSL SSVGALPVAP PKADAGQAAA AGTTPVAERV ELSIGKSAID SLKDAAGNGE  60
   61 SFRAERVAEV RQQMIEGAYR VDARSVAMRM IGTNV

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.41
Match: 1rp3B
Description: Cocrystal structure of the flagellar sigma/anti-sigma complex, Sigma-28/FlgM
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.898156665835644 bayes_pls_golite062009
protein binding 0.114198899043901 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle