YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39998017, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	253 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39998017, gi|....

Description	E-value	Query Range	Subject Range
gi\|57157617, gi\|... - gi\|57157617\|dbj\|BAD83575.1\| heat shock 70kDa protein [Oncorhynchus mykiss], gi\|185132306\|ref\|NP_0011...	223.0	[0..16]	[252..96]
gi\|113208387 - gi\|113208387\|dbj\|BAF03556.1\| heat shock cognate protein 70 [Mamestra brassicae]	223.0	[0..16]	[251..96]
gi\|1495233 - gi\|1495233\|gb\|AAB06239.1\| HSC70	223.0	[0..16]	[251..96]
gi\|229892265, gi... - gi\|66525499\|ref\|XP_623130.1\| PREDICTED: similar to heat shock protein 8 isoform 1 [Apis mellifera], ...	223.0	[0..16]	[251..94]
HSP7D_MANSE - Heat shock 70 kDa protein cognate 4 OS=Manduca sexta PE=2 SV=1	222.0	[0..16]	[251..94]
gi\|56462364 - gi\|56462364\|gb\|AAV91465.1\| heat shock protein 4 heat shock cognate 70 protein [Lonomia obliqua]	222.0	[0..16]	[251..94]
HSP70_ONCTS - Heat shock 70 kDa protein OS=Oncorhynchus tshawytscha GN=hsp70 PE=2 SV=1	222.0	[0..16]	[252..96]
gi\|112982828, gi... - gi\|20563125\|dbj\|BAB92074.1\| heat shock cognate protein [Bombyx mori], gi\|112982828\|ref\|NP_001036892....	221.0	[0..16]	[251..94]

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Predicted Domain #1

Region A:
Residues: [1-253]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLGIDLGSR KAKFALVQEG HVIRLADHDT VPFYKRYGRL EGEELVLDLA ASGLFSAEEL  60
   61 EGATVVVTGY GRNTLSLRGA RVVSEIRAHV AGALAQTGLA DFTLLDMGGQ DTKVALVKAG 120
  121 KLTDFVMNDK CAASSGRYLE NMAAILEVSL AELSSHWHDP VPLDATCGIF GESELIGQIL 180
  181 RGYPVERLCA GVNQTLVKRV LPMLRRFPSE TVVLTGGVAH NRALVRLLEE ATGRTLVVPE 240
  241 HPQHNGAIGC ASM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.522879
Match:	1huxA
Description:	Hydroxyglutaryl-CoA dehydratase component A
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
kinase activity	1.55847742629362	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	1.41326067130808	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	1.32934175997085	bayes_pls_golite062009
acetate kinase activity	1.02147739254786	bayes_pls_golite062009
transferase activity	0.752605732921866	bayes_pls_golite062009
catalytic activity	0.666924658593345	bayes_pls_golite062009
protein binding	0.375225171889093	bayes_pls_golite062009
carbohydrate kinase activity	0.21579608499336	bayes_pls_golite062009
binding	0.186094217739223	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: