YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39984706, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	238 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39984706, gi|....

Description	E-value	Query Range	Subject Range
gi\|30249731, gi\|... - gi\|30249731\|ref\|NP_841801.1\| NADH dehydrogenase subunit G [Nitrosomonas europaea ATCC 19718], gi\|301...	217.0	[0..3]	[227..1]
gi\|55716039, gi\|... - gi\|56090150\|ref\|NP_001007766.1\| NADH dehydrogenase (ubiquinone) Fe-S protein 1 [Danio rerio], gi\|557...	216.0	[0..3]	[225..35]
gi\|114330931, gi... - gi\|71549640\|ref\|ZP_00669831.1\| NADH-quinone oxidoreductase, chain G [Nitrosomonas eutropha C71], gi\|...	213.0	[0..3]	[227..1]
gi\|56314225, gi\|... - gi\|56478182\|ref\|YP_159771.1\| NADH dehydrogenase subunit G [Aromatoleum aromaticum EbN1], gi\|56314225...	213.0	[0..3]	[226..1]
gi\|157938219, gi... - gi\|254190544\|ref\|ZP_04897051.1\| NADH-quinone oxidoreductase, G subunit [Burkholderia pseudomallei Pa... gi\|167845010 - gi\|167845010\|ref\|ZP_02470518.1\| NADH dehydrogenase subunit G [Burkholderia pseudomallei B7210] gi\|254217889, gi... - gi\|254259200\|ref\|ZP_04950254.1\| NADH-quinone oxidoreductase, G subunit [Burkholderia pseudomallei 17... gi\|76810119, gi\|... - gi\|76810119\|ref\|YP_332850.1\| NADH dehydrogenase subunit G [Burkholderia pseudomallei 1710b], gi\|7657... gi\|242140652, gi... - gi\|242317413\|ref\|ZP_04816429.1\| NADH dehydrogenase I, G subunit [Burkholderia pseudomallei 1106b], g... gi\|126227032, gi... - gi\|126453390\|ref\|YP_001065583.1\| NADH dehydrogenase subunit G [Burkholderia pseudomallei 1106a], gi\|...	213.0	[0..3]	[226..1]
gi\|167910233 - gi\|167910233\|ref\|ZP_02497324.1\| NADH dehydrogenase subunit G [Burkholderia pseudomallei 112] gi\|167893551 - gi\|167893551\|ref\|ZP_02480953.1\| NADH dehydrogenase subunit G [Burkholderia pseudomallei 7894] gi\|217397052, gi... - gi\|217419748\|ref\|ZP_03451254.1\| NADH dehydrogenase I, G subunit [Burkholderia pseudomallei 576], gi\|... gi\|53718853, gi\|... - gi\|53718853\|ref\|YP_107839.1\| NADH dehydrogenase subunit G [Burkholderia pseudomallei K96243], gi\|522... gi\|167823458 - gi\|167823458\|ref\|ZP_02454929.1\| NADH dehydrogenase subunit G [Burkholderia pseudomallei 9] gi\|167815042 - gi\|167815042\|ref\|ZP_02446722.1\| NADH dehydrogenase subunit G [Burkholderia pseudomallei 91]	213.0	[0..3]	[226..1]
gi\|167901997 - gi\|167901997\|ref\|ZP_02489202.1\| NADH dehydrogenase subunit G [Burkholderia pseudomallei NCTC 13177] gi\|243063696, gi... - gi\|243063696\|gb\|EES45882.1\| NADH dehydrogenase I, G subunit [Burkholderia mallei PRL-20], gi\|1670003... gi\|121598545, gi... - gi\|121598545\|ref\|YP_992475.1\| NADH dehydrogenase subunit G [Burkholderia mallei SAVP1], gi\|121227355... gi\|148029096, gi... - gi\|254359856\|ref\|ZP_04976126.1\| NADH dehydrogenase I, G subunit [Burkholderia mallei 2002721280], gi... gi\|53725813, gi\|... - gi\|53725813\|ref\|YP_103428.1\| NADH dehydrogenase subunit G [Burkholderia mallei ATCC 23344], gi\|52429... gi\|126243712, gi... - gi\|126450842\|ref\|YP_001079993.1\| NADH dehydrogenase subunit G [Burkholderia mallei NCTC 10247], gi\|1... gi\|147751328, gi... - gi\|254207434\|ref\|ZP_04913784.1\| NADH dehydrogenase I, G subunit [Burkholderia mallei JHU], gi\|194527... gi\|124293309, gi... - gi\|124385289\|ref\|YP_001026722.1\| NADH dehydrogenase subunit G [Burkholderia mallei NCTC 10229], gi\|1... gi\|147746351, gi... - gi\|254202104\|ref\|ZP_04908467.1\| NADH dehydrogenase I, G subunit [Burkholderia mallei FMH], gi\|194522... gi\|238562074, gi... - gi\|238562074\|ref\|ZP_00440946.2\| NADH dehydrogenase (quinone), g subunit [Burkholderia mallei GB8 hor... gi\|194570324, gi... - gi\|254298539\|ref\|ZP_04965991.1\| NADH-quinone oxidoreductase, G subunit [Burkholderia pseudomallei 40... gi\|254175667, gi... - gi\|254175667\|ref\|ZP_04882327.1\| NADH dehydrogenase I, G subunit [Burkholderia mallei ATCC 10399], gi...	213.0	[0..3]	[226..1]
gi\|83575810, gi\|... - gi\|83592896\|ref\|YP_426648.1\| NADH dehydrogenase subunit G [Rhodospirillum rubrum ATCC 11170], gi\|835... gi\|48764641 - ref\|ZP_00269192.1\| COG1034: NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G...	213.0	[0..3]	[225..1]
gi\|167618537 - gi\|167618537\|ref\|ZP_02387168.1\| NADH dehydrogenase subunit G [Burkholderia thailandensis Bt4] gi\|83721460, gi\|... - gi\|83721460\|ref\|YP_441620.1\| NADH dehydrogenase subunit G [Burkholderia thailandensis E264], gi\|8365...	212.0	[0..3]	[226..1]
gi\|71062701, gi\|... - gi\|71083588\|ref\|YP_266307.1\| NADH dehydrogenase subunit G [Candidatus Pelagibacter ubique HTCC1062],...	212.0	[0..3]	[231..1]

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Predicted Domain #1

Region A:
Residues: [1-238]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVITLTIDD ELISGREGET LLQVIKEHGI SLPTLCHMEG LSERGGCRLC IVEVAGSPRP  60
   61 LPACTTPARE GMVVRTRSER LENYRRMLVE LMLAERNHYC AVCVSIGHCE LQRVAAEMGV 120
  121 DHVRYEYLSP KLTMDLSHER FGLDHNRCIL CTRCVRVCDE IEGVHTWDIS GRGVKSRIIA 180
  181 DLNRSWRESG TCTSCGKCVQ VCPTGALFLK GAVVGEMVKD PTMLARVLEG REKKEWEG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.522879
Match:	2fug3
Description:	Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on the CH-NH group of donors, quinone or similar compound as acceptor	0.671858900007795	bayes_pls_golite062009
binding	0.479100316884633	bayes_pls_golite062009
catalytic activity	0.105119876745552	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: