YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39997772, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	151 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39997772, gi|....

Description	E-value	Query Range	Subject Range
gi\|53692051, gi\|... - gi\|78358451\|ref\|YP_389900.1\| small HspC2 heat shock protein [Desulfovibrio desulfuricans subsp. desu...	129.0	[0..1]	[150..27]
gi\|91709511, gi\|... - gi\|91775524\|ref\|YP_545280.1\| heat shock protein Hsp20 [Methylobacillus flagellatus KT], gi\|91709511\|...	129.0	[0..1]	[150..34]
gi\|27379748, gi\|... - gi\|27379748\|ref\|NP_771277.1\| HspC2 heat shock protein [Bradyrhizobium japonicum USDA 110], gi\|273529...	128.0	[0..8]	[151..23]
gi\|85857896, gi\|... - gi\|85857896\|ref\|YP_460098.1\| molecular chaperone [Syntrophus aciditrophicus SB], gi\|85720987\|gb\|ABC7...	127.0	[0..9]	[150..24]
gi\|57282287 - gi\|57282287\|emb\|CAD32528.1\| putative heat shock protein 20 [uncultured bacterium] gi\|83583497, gi\|... - gi\|83583499\|gb\|ABC24667.1\| heat shock protein [Pseudomonas aeruginosa], gi\|83583497\|gb\|ABC24666.1\| h...	126.0	[0..1]	[150..34]
gi\|120326150, gi... - gi\|77953041\|ref\|ZP_00817452.1\| small HspC2 heat shock protein [Marinobacter aquaeolei VT8], gi\|77867...	126.0	[0..1]	[150..34]
gi\|8671873 - gi\|8671873\|gb\|AAF78436.1\|AC018748_15 Contains similarity to 17.6 KD class I heat shock protein from ...	126.0	[0..2]	[150..264]
HS17A_ORYSJ - 17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1 HSP23_ORYSA - 17.4 kDa class I heat shock protein 3 - Oryza sativa (Rice) gi\|125543232 - gi\|125543232\|gb\|EAY89371.1\| hypothetical protein OsI_10878 [Oryza sativa Indica Group]	125.0	[0..2]	[150..12]
gi\|25987069 - gi\|25987069\|gb\|AAN74534.1\| chloroplast low molecular weight heat shock protein HSP26.2 [Agrostis sto...	123.0	[0..2]	[151..85]
gi\|87240494 - gi\|87240494\|gb\|ABD32352.1\| Heat shock protein Hsp20 [Medicago truncatula]	123.0	[0..2]	[150..18]

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Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPMSSTVTNP FREMERWFEE SLNRPFFGMN WVPFRNLIND LGNTGELMPA VDMFEEGEHL  60
   61 VVKAELPGIS RDDLNLRIVD GNLIISGEKR SGETVERSNY LRLERHHGSF TRTLRLPDGL 120
  121 DTEHIKASFR DGILDVRIPK TESTVRQITV E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.30103
Match:	1gmeA
Description:	Small heat shock protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.54721252992048	bayes_pls_golite062009
protein binding	0.643437066451821	bayes_pls_golite062009
catalytic activity	0.260308151913118	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: