YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39984396, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39984396, gi|....

Description	E-value	Query Range	Subject Range
gi\|8671873 - gi\|8671873\|gb\|AAF78436.1\|AC018748_15 Contains similarity to 17.6 KD class I heat shock protein from ...	143.0	[0..4]	[149..262]
gi\|41059801 - gi\|41059801\|gb\|AAR99375.1\| small heat shock protein [Prunus persica]	138.0	[0..4]	[149..14]
HSP16_SOYBN - 18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1	137.0	[0..4]	[149..16]
gi\|85857896, gi\|... - gi\|85857896\|ref\|YP_460098.1\| molecular chaperone [Syntrophus aciditrophicus SB], gi\|85720987\|gb\|ABC7...	137.0	[0..9]	[149..25]
gi\|83776798 - gi\|83776798\|gb\|ABC46712.1\| 17.5 kDa class I HSP [Arachis hypogaea]	136.0	[0..2]	[149..3]
gi\|38639431 - gi\|38639431\|gb\|AAR25848.1\| 17.5 kDa class I heat shock protein [Carica papaya]	136.0	[0..8]	[149..14]
HS177_ORYSJ - 17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1 HSP22_ORYSA - 17.4 kDa class I heat shock protein 2 - Oryza sativa (Rice)	136.0	[0..4]	[149..10]
gi\|87240494 - gi\|87240494\|gb\|ABD32352.1\| Heat shock protein Hsp20 [Medicago truncatula]	136.0	[0..4]	[149..16]
HSP12_MEDSA - 18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1	135.0	[0..4]	[149..16]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATWDVFKEL DNLRREIDEA FRGAGFGRPF GPTFLSPVTS RRFPLVNFSE DEGYIYIEAL  60
   61 VPGVDPKDVD LSVLRNTVTI SGERKPFVQS EGQIVHRSEL GSGKFSRTLE LPTDIDPGKI 120
  121 TAQCKDGILR IALAKAEHAK PKKIEIKLS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.522879
Match:	1gmeA
Description:	Small heat shock protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.20758866613061	bayes_pls_golite062009
catalytic activity	0.63074808892513	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: