YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39997181, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	300 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39997181, gi|....

Description	E-value	Query Range	Subject Range
gi\|83746221, gi\|... - gi\|83746221\|ref\|ZP_00943275.1\| Glucose-1-phosphate thymidylyltransferase [Ralstonia solanacearum UW5...	296.0	[0..3]	[290..70]
gi\|72132990 - gi\|72132990\|gb\|AAZ66343.1\| RmlA [Listonella anguillarum]	294.0	[0..4]	[291..1]
gi\|17427695 - gi\|17427695\|emb\|CAD14214.1\| probable glucose-1-phosphate thymidylyltransferase protein [Ralstonia so... gi\|17545403 - gi\|17545403\|ref\|NP_518805.1\| glucose-1-phosphate thymidylyltransferase protein [Ralstonia solanacear...	292.0	[0..3]	[290..1]
gi\|34811708, gi\|... - gi\|34811708\|pdb\|1H5S\|B Chain B, Thymidylyltransferase Complexed With Tmp, gi\|21466153\|pdb\|1H5T\|B Cha...	291.0	[0..1]	[291..1]
gi\|11261719 - pir\|\|B81240 glucose-1-phosphate thymidylyltransferase NMB0080, NMB0062 [imported] - Neisseria mening... RMLA_NEIMB - Glucose-1-phosphate thymidylyltransferase OS=Neisseria meningitidis serogroup B (strain MC58) GN=rml... RMLA_NEIMB - Glucose-1-phosphate thymidylyltransferase OS=Neisseria meningitidis serogroup B GN=rmlA1 PE=3 SV=2	291.0	[0..4]	[289..1]
gi\|21466154\|pdb\|... - Chain D, Thymidylyltransferase Complexed With Thimidine And Glucose-1-Phospate, Chain C, Thymidylylt... RMA1_ECOLI, RMLA... - Glucose-1-phosphate thymidylyltransferase 1 (EC 2.7.7.24) (dTDP-glucose synthase 1) (dTDP-glucose py... gi\|170081669, gi... - gi\|170081669\|ref\|YP_001730989.1\| glucose-1-phosphate thymidylyltransferase [Escherichia coli str. K-... EG11978 - glucose-1-phosphate thymidylyltransferase / Glucose-1-phosphate thymidylyltransferase 1; TDP-glucose... gi\|89108859, gi\|... - gi\|89108859\|ref\|AP_002639.1\| glucose-1-phosphate thymidylyltransferase [Escherichia coli str. K-12 s... gi\|238901229, gi... - gi\|238901229\|ref\|YP_002927025.1\| glucose-1-phosphate thymidylyltransferase [Escherichia coli BW2952]... EG11978 - glucose-1-phosphate thymidylyltransferase / Glucose-1-phosphate thymidylyltransferase 1; TDP-glucose...	291.0	[0..1]	[291..1]
gi\|91789858, gi\|... - gi\|91789858\|ref\|YP_550810.1\| glucose-1-phosphate thymidylyltransferase [Polaromonas sp. JS666], gi\|9...	291.0	[0..4]	[289..15]
gi\|1098479 - gi\|1098479\|gb\|AAC37050.1\| glucose-1-phosphate thymidyl transferase [Neisseria meningitidis]	291.0	[0..3]	[289..13]

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Predicted Domain #1

Region A:
Residues: [1-300]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAISKGIILA GGAGSRLYPL TLVASKQLQP VYDKPMIYYP LATLMMAGIK DILIISTPHD  60
   61 TPRFQALLGD GSRWGITLTY KVQPEPKGIA QAFLVGEEFI AGDPVCLILG DNIFYGKMGL 120
  121 DRLVQDFTTG AWIFGYYVND PERYGVVQFD GNGKAIGIEE KPAQPKSNYA VPGLYLYDGR 180
  181 VVDVARNLAP SPRGELEITD VNLDYLRRGE LMVERLGRGI AWLDTGTHQS LLEASHFIGT 240
  241 LEARQGLKIA CLEEIALRMG FIDCRRMAEV IAETPKSSYR DYLARIYNET ELCGGVVHER 300
  301

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	79.0
Match:	1h5rB
Description:	RmlA (RfbA)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
uridylyltransferase activity	3.74072767898515	bayes_pls_golite062009
transferase activity, transferring hexosyl groups	2.70047942699289	bayes_pls_golite062009
UTP:glucose-1-phosphate uridylyltransferase activity	2.65167602524122	bayes_pls_golite062009
UTP-monosaccharide-1-phosphate uridylyltransferase activity	2.46432078102948	bayes_pls_golite062009
UDP-glycosyltransferase activity	2.33861720107822	bayes_pls_golite062009
transferase activity	2.17535315350752	bayes_pls_golite062009
catalytic activity	1.88676710996045	bayes_pls_golite062009
acetylgalactosaminyltransferase activity	1.33788133706753	bayes_pls_golite062009
nucleotidyltransferase activity	1.17054423506287	bayes_pls_golite062009
polypeptide N-acetylgalactosaminyltransferase activity	1.10309252319727	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	1.02084820914491	bayes_pls_golite062009
cytidylyltransferase activity	0.983416157001861	bayes_pls_golite062009
mannosyltransferase activity	0.91123217364068	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	0.897978517422275	bayes_pls_golite062009
UDP-N-acetylglucosamine diphosphorylase activity	0.513376694534047	bayes_pls_golite062009
mannose-phosphate guanylyltransferase activity	0.2363835251362	bayes_pls_golite062009
guanylyltransferase activity	0.0539392112504681	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: