YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39983987, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	74 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39983987, gi|....

Description	E-value	Query Range	Subject Range
gi\|91720710, gi\|... - gi\|91770239\|ref\|ZP_01272067.1\| Host factor Hfq [Psychrobacter sp. PRwf-1], gi\|91720710\|gb\|EAS86631.1...	120.0	[0..1]	[66..1]
gi\|71160101, gi\|... - gi\|93006319\|ref\|YP_580756.1\| host factor Hfq [Psychrobacter cryohalolentis K5], gi\|92393997\|gb\|ABE75...	120.0	[0..1]	[66..1]
gi\|46141659, gi\|... - gi\|71065481\|ref\|YP_264208.1\| RNA-binding protein Hfq [Psychrobacter arcticus 273-4], gi\|71038466\|gb\|...	119.0	[0..1]	[66..1]
gi\|88939837, gi\|... - gi\|88939837\|ref\|ZP_01145282.1\| Host factor Hfq [Acidiphilium cryptum JF-5], gi\|88921471\|gb\|EAR40577....	118.0	[0..2]	[65..75]
gi\|89360214, gi\|... - gi\|89360214\|ref\|ZP_01198033.1\| Host factor Hfq [Xanthobacter autotrophicus Py2], gi\|89350946\|gb\|EAS1...	116.0	[0..2]	[69..25]
gi\|95112859 - gi\|95112859\|emb\|CAK17587.1\| Hfq protein [Pseudomonas entomophila L48] HFQ_PSEE4 - RNA-binding protein Hfq OS=Pseudomonas entomophila (strain L48) GN=hfq PE=3 SV=1	114.0	[0..1]	[66..1]
gi\|50085463, gi\|... - gi\|50085463\|ref\|YP_046973.1\| host factor I for bacteriophage Q beta replication, a growth-related pr...	114.0	[0..1]	[66..1]
HFQ_JANSC - RNA-binding protein Hfq OS=Jannaschia sp. (strain CCS1) GN=hfq PE=3 SV=1	114.0	[0..1]	[66..1]
gi\|58582569, gi\|... - gi\|58582569\|ref\|YP_201585.1\| RNA-binding protein Hfq [Xanthomonas oryzae pv. oryzae KACC10331], gi\|5...	114.0	[0..1]	[66..18]
gi\|254474892, gi... - gi\|254474892\|ref\|ZP_05088278.1\| RNA chaperone Hfq [Ruegeria sp. R11], gi\|225135572\|ref\|YP_002702579.... gi\|126721083, gi... - gi\|126737690\|ref\|ZP_01753420.1\| RNA-binding protein Hfq [Roseobacter sp. SK209-2-6], gi\|126721083\|gb... gi\|161385459, gi... - gi\|163741106\|ref\|ZP_02148498.1\| RNA-binding protein Hfq [Phaeobacter gallaeciensis 2.10], gi\|1613854... gi\|163736359, gi... - gi\|163736359\|ref\|ZP_02143778.1\| host factor-I protein [Phaeobacter gallaeciensis BS107], gi\|16139022... gi\|86138350, gi\|... - gi\|86138350\|ref\|ZP_01056924.1\| RNA-binding protein Hfq [Roseobacter sp. MED193], gi\|85824875\|gb\|EAQ4...	114.0	[0..1]	[66..1]

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Predicted Domain #1

Region A:
Residues: [1-74]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKAPFNIQD QYLNQSRKER IKVAVRLMSG EKLEGYIKSF DNFSVLMEIQ GDMLIYKHAI  60
   61 TSITSVDGHF RLHQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.154902
Match:	1u1sA
Description:	Hfq protein from Pseudomonas aeruginosa. Low-salt crystals
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
	3.35169246976368	bayes_pls_golite062009
RNA binding	2.84369313702118	bayes_pls_golite062009
nucleic acid binding	1.07404179279328	bayes_pls_golite062009
binding	0.707187860129652	bayes_pls_golite062009
catalytic activity	0.312834499620126	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: